Bläddra i källkod

Moving to public repo

Jose R Ortiz Ubarri 1 år sedan
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6c1bb3385b

+ 0
- 0
data/data.txt Visa fil


+ 263
- 0
dataanalysis.py Visa fil

@@ -0,0 +1,263 @@
1
+
2
+from readsample import *
3
+from operator import itemgetter
4
+
5
+class dataanalysis:
6
+
7
+	def getPeaks(self, samples, n_peaks, hash_key = "intensity"):
8
+		"Gets the top n_peaks massspec values in the file"
9
+
10
+		from operator import itemgetter
11
+
12
+		all_value = []
13
+		sample = samples.next()
14
+		while sample:
15
+			all_value.append(sample)
16
+			sample = samples.next()
17
+
18
+		all_value = sorted(all_value, key=itemgetter(hash_key), reverse=True)
19
+
20
+		return all_value[:n_peaks]
21
+
22
+	def getPeaksFromFile(self, samples, peaks, peak_range=4):
23
+		"Returns the n_peaks in a smaple file with key ms_key"
24
+
25
+		#peaks_hash = {key: {} for key in peaks}
26
+		peaks_hash = {}
27
+		for key in peaks:
28
+			peaks_hash[key] = {}
29
+			
30
+		for peak in peaks_hash.keys():
31
+			for val in range(int(peak) - peak_range, int(peak) + peak_range + 1):
32
+				peaks_hash[peak][val] = {"peak": val, "intensity": 0}
33
+ 		
34
+ 		#print peaks_hash
35
+
36
+		sample = samples.next() 
37
+		while sample:
38
+			for peak in peaks:
39
+				# Extrack the samples in range of each peak
40
+				if sample["peak"] >= (int(peak) - peak_range) and sample["peak"] <= (int(peak) + peak_range+1):
41
+					#peaks_hash[peak][0].append(sample)
42
+					# Keep track of the max_intensity
43
+					key = int(sample["peak"])
44
+					if peaks_hash[peak][key]["intensity"] < sample["intensity"]:
45
+						peaks_hash[peak][key] = sample
46
+
47
+
48
+			sample = samples.next()
49
+
50
+
51
+		# Final filtering.  Removing the false peaks.
52
+		self.FilterPeaks(peaks_hash)
53
+					
54
+		return peaks_hash
55
+
56
+	def FilterPeaks(self, peaks_hash):
57
+
58
+		# Final filtering.  Removing the false peaks.
59
+		for peak in peaks_hash.keys():
60
+			# Find max peak
61
+			max_peak = self.getMaxPeak(peaks_hash[peak])
62
+			keys = peaks_hash[peak].keys()
63
+			#print peaks_hash[peak]
64
+			keys.sort()
65
+
66
+			# Get list position of the max peak
67
+			position = keys.index(int(max_peak["peak"]))
68
+
69
+			# from the max down remove if intensity is greater than the next peak or 
70
+			# if decimal is not decimal of the peak
71
+			current_intensity = max_peak["intensity"]
72
+			max_dec = float(max_peak["peak"]) -1 #int(str(max_peak["peak"]).split(".")[1][0])
73
+			discard = 0 # After one point is discarded all others are.
74
+			for i in range(position-1, -1, -1):
75
+				current_dec = float(peaks_hash[peak][keys[i]]["peak"])#int(str(peaks_hash[peak][keys[i]]["peak"]).split(".")[1][0])
76
+				#print current_dec
77
+				if discard or current_dec < max_dec - .12 or current_dec > max_dec + .12 or peaks_hash[peak][keys[i]]["intensity"] >= current_intensity:
78
+					del peaks_hash[peak][keys[i]]	
79
+					discard = 1
80
+				else:
81
+					current_intensity = peaks_hash[peak][keys[i]]["intensity"]
82
+					max_dec -= 1
83
+
84
+			# From the max up remove if intensity is greater than the next peak or 
85
+			# if decimal is not decimal of the peak
86
+			current_intensity = max_peak["intensity"]
87
+			max_dec = float(max_peak["peak"]) + 1
88
+			discard = 0 # After one point is discarded all others are.
89
+			for i in range(position+1, len(keys)):
90
+				current_dec = float(peaks_hash[peak][keys[i]]["peak"]) #int(str(peaks_hash[peak][keys[i]]["peak"]).split(".")[1][0])
91
+				if  discard or current_dec > max_dec + .12 or current_dec < max_dec - .12 or peaks_hash[peak][keys[i]]["intensity"] >= current_intensity:
92
+					del peaks_hash[peak][keys[i]]	
93
+					discard = 1
94
+				else:
95
+					current_intensity = peaks_hash[peak][keys[i]]["intensity"]		
96
+					max_dec += 1
97
+
98
+	def getMaxPeak(self, peaks):
99
+		max_peak = {"peak": 0, "intensity": -1}
100
+		for peak in peaks.keys():
101
+			if max_peak["intensity"] < peaks[peak]["intensity"]:
102
+				max_peak = peaks[peak]
103
+		return max_peak
104
+
105
+
106
+	def getPeaksFromFileSet(self, file_set, peaks, sample_keys=["peak", "intensity"], peak_range=4):
107
+		"Returns a set of n_peaks in a set of sample files with keys found in peaks_file"
108
+
109
+		peak_set = {}
110
+
111
+		for filename in file_set:
112
+			samples = readsample(filename, sample_keys)
113
+			peak_set[''.join(filename.split())] = self.getPeaksFromFile(samples, peaks, peak_range)
114
+			samples.close()
115
+		return peak_set
116
+
117
+	def getPeaksFromFileList(self, file_set, peaks, sample_keys=["peak", "intensity"], peak_range=4):
118
+		"Returns a set of n_peaks in a set of sample files with keys found in list peaks"
119
+
120
+		peak_set = {}
121
+
122
+
123
+		for file in file_set:
124
+			samples = readsample(filename, sample_keys)
125
+			peak_set[''.join(filename.split())] = self.getPeaksFromFile(samples, peaks, peak_range)
126
+			samples.close()
127
+		return peak_set
128
+
129
+	def computePeakIntensity(self, peaks, hash_key="intensity"):
130
+		acum = 0
131
+
132
+		if type(peaks) == dict:
133
+			for key in peaks.keys():
134
+				acum += peaks[key][hash_key]
135
+	
136
+		# As comes from SQL DB		
137
+		else:
138
+			for peak in peaks:
139
+				acum += peak["peak"]
140
+
141
+		return acum
142
+
143
+
144
+	def computePeaksRelativeIntensity(self, peaks_childs, hash_key="intensity"):
145
+
146
+		totalIntentisty = 0
147
+		relative_intensities = {}
148
+
149
+		if type(peaks_childs) == dict:
150
+
151
+			for peak in peaks_childs.keys():
152
+				relative_intensities[peak] = self.computePeakIntensity(peaks_childs[peak], hash_key)
153
+				totalIntentisty += relative_intensities[peak]
154
+
155
+			for peak in peaks_childs.keys():
156
+				relative_intensities[peak] = relative_intensities[peak] / float(totalIntentisty)
157
+
158
+		# As comes from SQL DB
159
+		else:
160
+			for peak in peaks_childs:
161
+				relative_intensities[peak['peak']] = self.computePeakIntensity(peak["intensities"])
162
+				totalIntentisty += relative_intensities[peak['peak']]
163
+
164
+			for peak in peaks_childs:
165
+				relative_intensities[peak['peak']] = relative_intensities[peak['peak']] / float(totalIntentisty)
166
+
167
+
168
+		return relative_intensities
169
+
170
+
171
+	def relativeAbundanceAverage(self, abundances):
172
+
173
+		abundanceAverages = {}
174
+		peaks = abundances[0].keys()
175
+		for peak in peaks:
176
+			abundanceAverages[peak] = 0
177
+			for i in range(len(abundances)):
178
+				abundanceAverages[peak] += abundances[i][peak]
179
+
180
+			abundanceAverages[peak] = abundanceAverages[peak]/len(abundances)
181
+
182
+		return abundanceAverages
183
+
184
+	def relativeAbundanceStdDeviation(self, abundances, average):
185
+
186
+		import math
187
+
188
+		abundanceStdDev = {}
189
+		peaks = average.keys()
190
+		for peak in peaks:
191
+			abundanceStdDev[peak] = 0
192
+			for i in range(len(abundances)):
193
+				abundanceStdDev[peak] += pow(abundances[i][peak] - average[peak], 2)
194
+
195
+			abundanceStdDev[peak] = math.sqrt(1/float((len(abundances) - 1)) *   abundanceStdDev[peak]) 
196
+
197
+		return abundanceStdDev
198
+
199
+	def relativeAbundanceSDM(self, deviations, sample_size):
200
+
201
+		import math
202
+
203
+		abundanceSDM = {}
204
+		for peak in deviations.keys():
205
+			abundanceSDM[peak] = deviations[peak]/float(math.sqrt(sample_size))
206
+
207
+		return abundanceSDM
208
+
209
+
210
+
211
+	def printPeaksChilds(self, peaks_childs):
212
+		for peak in peaks_childs.keys():
213
+			print peak
214
+			for child in peaks_childs[peak].keys():
215
+				print "\t", peaks_childs[peak][child]["peak"], peaks_childs[peak][child]["intensity"],
216
+
217
+
218
+def main():
219
+	"Main to test the library"
220
+
221
+	peakread = readsample(sys.argv[1], None, None, 0)
222
+	peaks = peakread.readAll()
223
+
224
+	peaks = [float(x[0]) for x in peaks]
225
+	print peaks
226
+
227
+	samples = readsample(sys.argv[2], ["peak", "intensity"])
228
+	da = dataanalysis()
229
+
230
+	peaks_childs = da.getPeaksFromFile(samples, peaks)
231
+
232
+	da.printPeaksChilds(peaks_childs)
233
+
234
+
235
+	print da.computePeaksRelativeIntensity(peaks_childs)
236
+
237
+	sys.exit(0)
238
+
239
+	files_peak_childs = da.getPeaksFromFileSet(sys.argv[2:], peaks)
240
+
241
+	for key in files_peak_childs.keys():
242
+		print key
243
+		da.printPeaksChilds(files_peak_childs[key])
244
+
245
+	samples.close()
246
+
247
+	### Sort by peak
248
+
249
+	samples = readsample(sys.argv[2])
250
+	peaks = da.getPeaks(samples, 60)
251
+	for peak in peaks:
252
+		print peak
253
+	print
254
+	print
255
+	peaks = sorted(peaks, key=itemgetter("peak"), reverse=True)
256
+	for peak in peaks:
257
+		print peak
258
+
259
+	samples.close()
260
+
261
+
262
+if __name__ == '__main__':
263
+	main()

+ 390
- 0
maldisoft-engine.py Visa fil

@@ -0,0 +1,390 @@
1
+import os
2
+from flask import Flask, session, redirect, url_for, escape, request, render_template
3
+from werkzeug import secure_filename
4
+
5
+from maldisql import *
6
+from readsample import *
7
+from dataanalysis import *
8
+
9
+app = Flask(__name__)
10
+app.config["UPLOAD_FOLDER"] = "data"
11
+
12
+def CheckINT(eid):
13
+	ceid = None
14
+	try:
15
+		ceid = int(eid)
16
+	except:
17
+		return ceid
18
+
19
+	return ceid
20
+
21
+def alert(msg, mtype="danger"):
22
+	mhash = {"type": mtype, "msg": msg}
23
+
24
+	return mhash
25
+
26
+###############################################################################
27
+#
28
+# 	@app.route /
29
+#
30
+###############################################################################
31
+
32
+@app.route('/', methods=['GET', 'POST'])
33
+def index():
34
+	if  not 'uid' in session:
35
+		return redirect(url_for("login"))
36
+
37
+	msql = maldisql()
38
+
39
+	msg = []
40
+	if "msg" in session:
41
+		msg = session["msg"][:]
42
+		session.pop("msg", None)
43
+
44
+	if request.method == 'POST':
45
+		if "deid" in request.form:
46
+			eid = CheckINT(request.form["deid"])
47
+			if eid and msql.CheckEIDOwner(eid, session["uid"]):
48
+				if msql.DeleteExperiment(eid):
49
+					msg.append(alert("Experiment delete successful!", "success"))
50
+			else:
51
+				msg.append(alert("Wrong experiment or permissions!"))
52
+
53
+	experiments = msql.GetExperiments(session["uid"])
54
+	col_experiments = msql.GetCollaborations(session["uid"])
55
+
56
+	msql.close()
57
+	return render_template("index.html", email=escape(session['email']), 
58
+		experiments=experiments, col_experiments=col_experiments, msg=msg)
59
+
60
+###############################################################################
61
+#
62
+# 	@app.route /experiment
63
+#
64
+###############################################################################
65
+
66
+@app.route('/experiment', methods=['GET', 'POST'])
67
+def experiment():
68
+	if  not 'uid' in session:
69
+		return redirect(url_for("login"))
70
+
71
+	# Initialize EID
72
+	msg = []
73
+	eid = None
74
+	if "eid" in session:
75
+		eid = session["eid"]
76
+
77
+	msql = maldisql()
78
+	if request.method == 'POST':
79
+
80
+		# Create a new Experiment Fast Creation
81
+		if 'expname' in request.form and 'inpeaks' in request.form and not 'eid' in request.form:
82
+			result = msql.CreateExperiment(escape(request.form["expname"]), "Description here", session["uid"])
83
+			print eid
84
+			eid = CheckINT(result)
85
+			print eid
86
+			if eid:
87
+				session["eid"] = eid
88
+			else:
89
+				session["msg"] = [alert(result)]
90
+				return redirect(url_for("index"))
91
+
92
+			for peak in request.form["inpeaks"].split(","):
93
+				try:
94
+					peak = float(peak.strip())
95
+					msql.AddExperimentPeak(eid, peak)
96
+				except:
97
+					msg.append(alert("Peak format error it MUST be a decimal \
98
+						value or a list of decimal values separated by commas"))
99
+
100
+		# If EID is in the request.  
101
+		# anymore.
102
+		if "eid" in request.form:
103
+			eid = CheckINT(request.form["eid"])
104
+			if eid and msql.CheckEIDOwner(eid, session["uid"]):
105
+				session["eid"] = eid
106
+			else:
107
+				session["msg"] = [alert("You have not permission to view that experiment")]
108
+				return redirect("index")
109
+
110
+
111
+	if not eid:
112
+		msql.close()
113
+		return redirect(url_for("index"))
114
+
115
+	experiment = msql.GetExperiment(eid)
116
+	samples = msql.GetSamples(eid)
117
+	exp_peaks = msql.GetExperimentPeaks(eid)
118
+
119
+	da = dataanalysis()
120
+
121
+	abundances = []
122
+
123
+	for sample in samples:
124
+		sample["peaks"] = msql.GetPeaks(sample["sid"])
125
+		if sample["peaks"]:
126
+			sample["rel_ints"] =  da.computePeaksRelativeIntensity(sample["peaks"])
127
+			if sample["rel_ints"]:
128
+				abundances.append(sample["rel_ints"])
129
+
130
+	msql.close()
131
+
132
+	averages = None
133
+	stdDevs = None
134
+	sems = None
135
+	if len(abundances) > 1:
136
+		averages = da.relativeAbundanceAverage(abundances)
137
+		stdDevs = da.relativeAbundanceStdDeviation(abundances, averages)
138
+		sems = da.relativeAbundanceSDM(stdDevs, len(abundances))
139
+	else:
140
+		msg.append(alert("Wait for it!  To get Averages, Standard Dev, and SEMs you \
141
+			need to have more than one sample file.", "success"))
142
+
143
+	return render_template("experiment.html", email=escape(session['email']), 
144
+		experiment=experiment, exp_peaks=exp_peaks, samples=samples, averages=averages,
145
+		stdDevs=stdDevs, sems=sems, eid=eid, msg=msg)
146
+
147
+
148
+###############################################################################
149
+#
150
+# 	@app.route /editExperiment
151
+#
152
+###############################################################################
153
+
154
+@app.route('/editExperiment', methods=['GET', 'POST'])
155
+def editExperiment():
156
+
157
+	if not request.method == 'POST':
158
+		return redirect(url_for("index"))
159
+
160
+	msg = []
161
+	
162
+	experiment = None
163
+	exp_peaks = None
164
+	name = None
165
+	description = None
166
+	eid = None
167
+
168
+	msql = maldisql()
169
+	if "eid" in session:
170
+		eid = session["eid"]
171
+
172
+
173
+	if eid  and "name" in request.form and "description" in request.form:
174
+		# Save information in database and redirect to experiment with eid
175
+		result = msql.UpdateExperiment(escape(request.form["name"]), escape(request.form["description"]), eid)
176
+			
177
+		if not result:
178
+			#msql.close()
179
+			msg.append(alert("Update successful", "success"))
180
+			#return redirect(url_for("experiment"), code=307)
181
+		else:
182
+			msg.append(alert("Experiment Info Update failed!"))
183
+
184
+
185
+	if eid and "inpeaks" in request.form:
186
+		for peak in request.form["inpeaks"].split(","):
187
+			try:
188
+				peak = float(peak.strip())
189
+				msql.AddExperimentPeak(eid, peak)
190
+			except:
191
+				msg.append(alert("Bad peak format!"))
192
+
193
+	if eid and "collaborators" in request.form:
194
+		result = msql.AddExperimentCollaborator(eid, escape(request.form["collaborators"]))
195
+		if type(result) in [int, long]:
196
+			msg.append(alert("Collaborator added successfuly!", "success"))
197
+		else:
198
+			msg.append(alert(result))
199
+
200
+	if eid and "remove_peak" in request.form:
201
+		# Remove one peak but first check if it belongs to uid
202
+		exp_peaks = msql.GetExperimentPeaks(eid)
203
+		peak = CheckINT(request.form["remove_peak"])
204
+		for epeak in exp_peaks:
205
+			if peak == epeak["ep_id"]:	
206
+				if msql.RemovePeak(peak):
207
+					msg.append(alert("Peak deleted successfuly!", "success"))
208
+				else:
209
+					msg.append(alert("Couldn't delete peak!"))
210
+				break
211
+
212
+
213
+	if eid and "remove_col" in request.form:
214
+		collaborators = msql.GetExperimentCollaborators(eid)
215
+		colid = CheckINT(request.form["remove_col"])
216
+		for col in collaborators:
217
+			if colid == col["ueid"]:	
218
+				if msql.RemoveExperimentCollaborator(colid):
219
+					msg.append(alert("Collaborator removed successfuly!", "success"))
220
+				else:
221
+					msg.append(alert("Couldn't remove collaborator!"))
222
+				break
223
+
224
+	if eid:
225
+		experiment = msql.GetExperiment(eid)
226
+		exp_peaks = msql.GetExperimentPeaks(eid)
227
+		collaborators = msql.GetExperimentCollaborators(eid)
228
+		name = experiment["name"]
229
+		description = experiment["description"]
230
+		samples = msql.GetSamples(eid)
231
+		if len(samples):
232
+			samples=True
233
+	msql.close()
234
+
235
+	return render_template("editexperiment.html", email=escape(session['email']), 
236
+		name=name, description=description, exp_peaks=exp_peaks, collaborators=collaborators,
237
+		samples=samples, msg=msg)
238
+
239
+
240
+
241
+
242
+###############################################################################
243
+#
244
+# 	@app.route /login
245
+#
246
+###############################################################################
247
+
248
+@app.route('/login', methods=['GET', 'POST'])
249
+def login():
250
+
251
+	msg = []
252
+	if request.method == 'POST':
253
+		
254
+		if "email" in request.form and "passwd" in request.form:
255
+			msql = maldisql()
256
+			uid = msql.Login(escape(request.form["email"]), escape(request.form["passwd"]))	
257
+			msql.close()		
258
+			if uid:
259
+				session["uid"] = uid
260
+				session["email"] = escape(request.form["email"])
261
+				return redirect(url_for('index'))
262
+			else:
263
+				msg.append(alert("Bad username or password."))
264
+    
265
+	return render_template("login.html", msg=msg)
266
+
267
+
268
+###############################################################################
269
+#
270
+# 	@app.route /upload
271
+#
272
+###############################################################################
273
+
274
+@app.route('/upload', methods=['GET', 'POST'])
275
+def upload_file():
276
+
277
+	if  not 'uid' in session:
278
+ 		return redirect(url_for("login"))
279
+
280
+	if "eid" in request.form and CheckINT(request.form["eid"]) == session["eid"]:
281
+		eid = session["eid"]
282
+
283
+		if 'file' in request.files:
284
+			msql = maldisql()
285
+			f = request.files['file']
286
+			try:
287
+				import uuid
288
+				uuid = str(uuid.uuid1())
289
+				filename = secure_filename(f.filename)
290
+				f.save("%s/%s" % (app.config["UPLOAD_FOLDER"], uuid))
291
+				msql = maldisql()
292
+				sid = msql.AddSample(eid, uuid, filename)
293
+			except:
294
+				msql.close()
295
+				error = "Unexpected problem saving file"
296
+				return error
297
+
298
+			peaks = msql.GetExperimentPeaks(eid)
299
+			# List of floats
300
+			try:
301
+				samples = readsample("%s/%s" % (app.config["UPLOAD_FOLDER"], uuid), ["peak", "intensity"])
302
+
303
+			except:
304
+				return "Couldn't read the file!"
305
+
306
+			try:
307
+				mda = dataanalysis()
308
+				peaks_childs = mda.getPeaksFromFile(samples, [float(x["peak"]) for x in peaks])
309
+
310
+				for peak in peaks_childs.keys(): 
311
+					pid = msql.AddPeak(sid, peak)
312
+					for child in peaks_childs[peak].keys():
313
+						msql.AddIntensity(pid, peaks_childs[peak][child]["peak"], 
314
+							peaks_childs[peak][child]["intensity"])
315
+			except:
316
+				return "Error processing the file"
317
+
318
+			# CHECK BECAUSE IF SECOND PART FAILS THERE WILL BE A FILENAME INSERTED
319
+			# ANYWAYS. CHECK AND REMOVE.
320
+
321
+
322
+	else:
323
+		return "Error"
324
+	return "OK"
325
+
326
+
327
+###############################################################################
328
+#
329
+# 	@app.route /profile
330
+#
331
+###############################################################################
332
+
333
+@app.route('/profile', methods=['GET', 'POST'])
334
+def profile():
335
+
336
+	if not "uid" in session:
337
+		return redirect(url_for("login"))
338
+
339
+	msql = maldisql()
340
+	msg = []
341
+	pmsg = []
342
+	if request.method == 'POST':
343
+		#if request.form["name"] and request.form["last"] and request.form["email"]:
344
+		if "name" in request.form and "last" in request.form and "email" in request.form:
345
+			# Update data to db 
346
+			error = msql.UpdateUser(session["uid"], escape(request.form["email"]), escape(request.form["name"]), escape(request.form["last"]))
347
+			if not error:
348
+				msg.append(alert("Successful profile update", "success"))	
349
+			else:
350
+				msg.append(alert(error))
351
+
352
+		elif "pwd" in request.form and "pwd2" in request.form:
353
+			# Update password
354
+			if request.form["pwd"] == request.form["pwd2"]:
355
+				perror = msql.UpdatePassword(escape(request.form["pwd"]), escape(session["uid"]))
356
+				if not perror:
357
+					pmsg.append(alert("Password change successful", "success"))
358
+				else:
359
+					pmsg.append(alert(perror))
360
+			else:
361
+				pmsg.append(alert("Passwords don't match"))
362
+	
363
+	# Get Profile
364
+	uinfo = msql.GetUser(session["uid"])
365
+
366
+	return render_template("profile.html", name=uinfo["name"], last=uinfo["last"], email=uinfo["email"], msg=msg, pmsg=pmsg)
367
+
368
+###############################################################################
369
+#
370
+# 	@app.route /logout
371
+#
372
+###############################################################################
373
+
374
+@app.route('/logout')
375
+def logout():
376
+	if  not 'uid' in session:
377
+		return redirect(url_for("login"))
378
+	# remove the username from the session if it's there
379
+	session.pop('uid', None)
380
+	session.pop('email', None)
381
+	if "eid" in session:
382
+		session.pop('eid', None)
383
+	return redirect(url_for('login'))
384
+
385
+# set the secret key.  keep this really secret:
386
+app.secret_key = 'A0Zr98j/3yX R~XHH!jmN]LWX/,?RT'
387
+
388
+if __name__ == '__main__':
389
+	app.run(host="0.0.0.0", port=8080, threaded=True, debug=True)
390
+

+ 331
- 0
maldisql.py Visa fil

@@ -0,0 +1,331 @@
1
+import MySQLdb
2
+
3
+class maldisql:
4
+	def __init__(self, host="localhost", db="maldisoft", user="maldiuser"):
5
+		passwd = ""
6
+		self.db = MySQLdb.connect(host=host, db=db, user=user, passwd=passwd)
7
+		self.db.autocommit(True)
8
+		self.c = self.db.cursor(MySQLdb.cursors.DictCursor)
9
+	
10
+	# New user functions
11
+	def AddUser(self, email, passwd, name, last):
12
+		try:
13
+			self.c.execute("""INSERT into USER (email, passwd, name, last, lastaccess) values 
14
+			(%s, %s, %s, %s, CURRENT_TIMESTAMP)""", 
15
+			(email, passwd, name, last))
16
+
17
+		except MySQLdb.IntegrityError, e:
18
+			return "%s|%s" % ("Duplicate",  e)
19
+		
20
+		except MySQLdb.Error, e: 
21
+			return e
22
+		
23
+		return self.c.lastrowid
24
+
25
+	def GetUser(self, uid):
26
+		try:
27
+			self.c.execute("""select email, name, last, lastaccess from USER where uid=%s""", uid)
28
+		except MySQLdb.Error, e:
29
+			return e
30
+
31
+		return self.c.fetchone()
32
+
33
+	def UpdatePassword(self, pwd, uid):
34
+		try:
35
+			self.c.execute("""update USER set passwd=%s where uid=%s""", (pwd, uid))
36
+
37
+		except MySQLdb.Error, e:
38
+			return e
39
+
40
+		return None
41
+
42
+	def UpdateUser(self, uid, email, name, last):
43
+		try:
44
+			self.c.execute("""update USER set email=%s, name=%s, last=%s where uid=%s""", (email, name, last, uid))
45
+		except MySQLdb.Error, e:
46
+			return e
47
+
48
+		return None
49
+
50
+	def ChangePassword(self, passwd):
51
+		try:
52
+			self.c.execute("""update USER set passwd=%s""", (passwd,))
53
+		except MySQLdb.Error, e:
54
+			return e
55
+		return None
56
+
57
+	def ChangeEmail(self, email, uid):
58
+		try:
59
+			self.c.execute("""update USER set email=%s where uid=%s""", (email,uid))
60
+		except MySQLdb.Error, e:
61
+			return e
62
+
63
+		return None
64
+
65
+	def Login(self, email, passwd):
66
+		try:
67
+			self.c.execute("""select uid, passwd from USER where email=%s""", email)
68
+		except MySQLdb.Error, e:
69
+			return None
70
+
71
+		user=self.c.fetchone()
72
+		if user and user["passwd"] == passwd:
73
+			try:
74
+				self.c.execute("""update USER set lastaccess=CURRENT_TIMESTAMP where uid=%s""", user["uid"])
75
+			except:
76
+				return None
77
+
78
+			return user["uid"]
79
+		else:
80
+			return None
81
+
82
+	# Create experiment functions
83
+
84
+	def CreateExperiment(self, name, description, uid):
85
+		try:
86
+			self.c.execute("""INSERT into EXPERIMENT (uid, name, description) values 
87
+				(%s, %s, %s)""",
88
+				(uid, name, description))
89
+		except MySQLdb.IntegrityError, e:
90
+			return "%s|%s" % ("Duplicate",  e)
91
+
92
+		except MySQLdb.Error, e:
93
+			return e
94
+
95
+		return int(self.c.lastrowid)
96
+
97
+
98
+	def UpdateExperiment(self, name, description, eid):
99
+		try:
100
+			self.c.execute("""update EXPERIMENT set name=%s, description=%s where eid=%s""",
101
+				(name, description, eid))
102
+		except MySQLdb.Error, e:
103
+			return e
104
+
105
+		return None
106
+
107
+	def DeleteExperiment(self, eid):
108
+		try:
109
+			self.c.execute("""delete from EXPERIMENT where eid=%s""", eid)
110
+		except:
111
+			return False
112
+
113
+		return True
114
+
115
+	def GetExperiments(self, uid):
116
+		try:
117
+			self.c.execute("""select eid, name, description, date from EXPERIMENT where uid=%s""", uid)
118
+	
119
+		except MySQLdb.Error, e:
120
+			return e
121
+
122
+		return self.c.fetchall()
123
+
124
+	def CheckEIDOwner(self, eid, uid):
125
+		try: 
126
+			self.c.execute("""select eid from EXPERIMENT where eid=%s and uid=%s""", (eid, uid))
127
+		except MySQLdb.Error, e:
128
+			return False
129
+		return True
130
+
131
+	def GetColEID(self, eid, uid):
132
+		try:
133
+			self.c.execute("""select eid from USER_EXPERIMENT where eid=%s and uid=%s""", (eid, uid))
134
+		except MySQLdb.Error, e:
135
+			return e
136
+		return self.c.fetchone()
137
+
138
+	def GetExperiment(self, eid):
139
+		try:
140
+			self.c.execute("""select uid, name, description, date from EXPERIMENT where eid=%s""", eid)
141
+	
142
+		except MySQLdb.Error, e:
143
+			return e
144
+
145
+		return self.c.fetchone()		
146
+
147
+	def ChangePassword(self, passwd):
148
+		try:
149
+			self.c.execute("""update USER set passwd=%s""", (passwd,))
150
+		except MySQLdb.Error, e:
151
+			return e
152
+	
153
+	def AddCollaborator(self, uid, eid):
154
+		try:
155
+			self.c.execute("""INSERT into USER_EXPERIMENT (uid, eid) values (%s, %s)""", (uid, eid))      
156
+		except MySQLdb.IntegrityError, e:
157
+			return "%s|%s" % ("Duplicate",  e)
158
+
159
+		except MySQLdb.Error, e:
160
+			return e
161
+
162
+		return self.c.lastrowid
163
+
164
+	def AddExperimentCollaborator(self, eid, email):
165
+
166
+		try: 
167
+			self.c.execute("""select uid from USER where email=%s""", email)
168
+			user = self.c.fetchone()
169
+		except:
170
+			return "Fail! Some error with the collaborator email."
171
+
172
+		if not user:
173
+			return "No such collaborator in the system"
174
+
175
+		return self.AddCollaborator(user["uid"], eid)
176
+
177
+	def GetExperimentCollaborators(self, eid):
178
+		try:
179
+			self.c.execute("""select USER.name as name, USER.last as last, email, ueid from  USER, USER_EXPERIMENT where USER.uid = USER_EXPERIMENT.uid and USER_EXPERIMENT.eid=%s""", eid)
180
+		except MySQLdb.Error, e:
181
+			return e
182
+
183
+		return self.c.fetchall()
184
+
185
+	def RemoveExperimentCollaborator(self, ueid):
186
+		try:
187
+			self.c.execute("""delete from USER_EXPERIMENT where ueid=%s""", ueid)
188
+		except:
189
+			return False
190
+
191
+		return True
192
+
193
+
194
+	def GetCollaborations(self, uid):
195
+		try:
196
+			self.c.execute("""select USER_EXPERIMENT.eid as eid, EXPERIMENT.name as name, description, date from EXPERIMENT, USER_EXPERIMENT where EXPERIMENT.eid = USER_EXPERIMENT.eid and USER_EXPERIMENT.uid=%s""", uid)
197
+		except MySQLdb.Error, e:
198
+			return e
199
+
200
+		return self.c.fetchall()
201
+	
202
+	def AddSample(self, eid, uuid, name):
203
+		try:
204
+			self.c.execute("""INSERT into SAMPLE (eid, uuid, name) values (%s, %s, %s)""", 
205
+				(eid, uuid, name))      
206
+		except MySQLdb.IntegrityError, e:
207
+			return "%s|%s" % ("Duplicate",  e)
208
+	
209
+		except MySQLdb.Error, e:
210
+			return e
211
+		return self.c.lastrowid
212
+
213
+
214
+	def GetSamples(self, eid):
215
+		try:
216
+			self.c.execute("""select sid, name, uuid, lastmodified from SAMPLE where eid=%s""", eid)
217
+		except MySQLdb.Error, e:
218
+			return e
219
+		return self.c.fetchall()
220
+
221
+	def GetSample(self, sid):
222
+		try:
223
+			self.c.execute("""select eid, name, uuid, lastmodified from SAMPLE where sid=%s""", sid)
224
+		except MySQLdb.Error, e:
225
+			return e
226
+
227
+		return self.c.fetchone()
228
+
229
+
230
+	def AddPeak(self, sid, peak):
231
+		try:
232
+			self.c.execute("""INSERT into PEAK (sid, peak) values (%s, %s)""", 
233
+				(sid, peak))
234
+		except MySQLdb.IntegrityError, e:
235
+			return "%s|%s" % ("Duplicate",  e)
236
+		except MySQLdb.Error, e:
237
+			return e
238
+
239
+		return self.c.lastrowid
240
+
241
+	def AddExperimentPeak(self, eid, peak):
242
+		try:
243
+			self.c.execute("""INSERT into EXPERIMENT_PEAK (eid, peak) values (%s, %s)""",
244
+				(eid, peak))
245
+		except MySQLdb.IntegrityError, e:
246
+			return "%s|%s" % ("Duplicate",  e)
247
+
248
+		except MySQLdb.Error, e:
249
+			return e
250
+
251
+		return self.c.lastrowid    	
252
+
253
+	def GetExperimentPeaks(self, eid):
254
+		try:
255
+			self.c.execute("""select * from EXPERIMENT_PEAK where eid=%s""", eid)
256
+		except MySQLdb.Error, e:
257
+			return e
258
+
259
+		return self.c.fetchall()
260
+
261
+	def RemovePeak(self, epid):
262
+		try:
263
+			self.c.execute("""delete from EXPERIMENT_PEAK where ep_id=%s""", epid)
264
+		except:
265
+			return False
266
+
267
+		return True
268
+
269
+	def GetPeaks(self, sid):
270
+		try:
271
+			self.c.execute("""select pid, peak from PEAK where sid=%s""", sid)
272
+		except MySQLdb.Error, e:
273
+			return e
274
+
275
+		peaks = self.c.fetchall()
276
+		for peak in peaks:
277
+			try:
278
+				self.c.execute("""select intensity_id, peak, intensity from INTENSITY where pid=%s""", peak["pid"]) 
279
+				peak["intensities"] = self.c.fetchall()
280
+			except MySQLdb.Error, e:
281
+				return e
282
+
283
+		return peaks
284
+			
285
+	def AddIntensity(self, pid, peak, intensity):
286
+		try:
287
+			self.c.execute("""INSERT into INTENSITY (pid, peak, intensity) values (%s, %s, %s)""",
288
+				(pid, peak, intensity))
289
+		except MySQLdb.IntegrityError, e:
290
+			return "%s|%s" % ("Duplicate",  e)
291
+		except MySQLdb.Error, e:
292
+			return e
293
+
294
+		return self.c.lastrowid
295
+	
296
+
297
+	def close(self):
298
+		self.db.close()
299
+
300
+
301
+def main():
302
+	check1 = 1
303
+
304
+	msql = maldisql()
305
+	if check1:
306
+
307
+		uid1 =  msql.AddUser("cheo@gmail.com","tuxi", "Jose", "Ortiz")
308
+		uid2 =  msql.AddUser("kary@gmail.com","tuxi", "Kariluz", "Davila")
309
+		print uid1
310
+		print msql.ChangePassword("sleepy")
311
+		print msql.ChangeEmail("cheojr@gmail.com", uid1)
312
+		eid = msql.CreateExperiment("EXp1", "Esto es la descr", uid1)
313
+		print "Experiment", eid
314
+		print eid, uid2
315
+		print msql.AddCollaborator(uid2, eid)
316
+		sid = msql.AddSample(eid, "hola", "asi se llama el sample")
317
+		print sid
318
+		pid = msql.AddPeak(sid, 1.3)
319
+		print pid
320
+		print msql.AddIntensity(pid, 100.3)	
321
+
322
+	print msql.GetUser(uid1)
323
+	print msql.GetExperiments(uid1)
324
+	print msql.GetCollaborations(uid2)
325
+	print msql.GetSamples(eid)
326
+	print msql.GetSample(sid)
327
+	print msql.GetPeaks(sid)
328
+	msql.close()
329
+
330
+if __name__ == "__main__":
331
+	main()

+ 6
- 0
peaks.txt Visa fil

@@ -0,0 +1,6 @@
1
+1257.4
2
+1419.5
3
+1581.5
4
+1743.6
5
+1809.7
6
+1905.6

+ 77
- 0
readsample.py Visa fil

@@ -0,0 +1,77 @@
1
+import os
2
+import sys
3
+
4
+class readsample:
5
+
6
+	def __init__(self, file, hash_keys=None, delimeter=None, skip=2):
7
+		"Open file and read the header."
8
+		self.fd = open(file, "r")
9
+		self.delimeter = delimeter
10
+		self.hash_keys = hash_keys
11
+		self.read_head(skip)
12
+		pass
13
+
14
+	def next(self):
15
+		"Read one record of the file and hash the fields"
16
+		line = self.fd.readline()
17
+		
18
+		if not line:
19
+			return None
20
+		if self.delimeter != None:
21
+			result = line.split(delimeter)
22
+		else:
23
+			result = line.split()
24
+		if self.hash_keys:
25
+			return self.createHash(result, self.hash_keys)
26
+		else:
27
+			return [float(x) for x in result]
28
+
29
+
30
+	def readAll(self):
31
+		"Read all records and return a list"
32
+		sample_list = []
33
+		sample = self.next()
34
+		while sample:	
35
+			sample_list.append(sample)
36
+			sample = self.next()
37
+
38
+		return sample_list
39
+
40
+	def read_head(self, skip = 2):
41
+		"This is to remove the header of the file"
42
+		"Reusing this code requires modifying this function"
43
+		"Most times just skip lines, and just change the default skip number"
44
+
45
+		for i in range(skip):	
46
+			self.fd.readline()
47
+
48
+	def createHash(self, s_line, hash_keys):
49
+		"This is to create a hash with the fields of the record"
50
+		"The record is already splitted in one list"
51
+		hash_res = {}
52
+		for i in range(len(hash_keys)):
53
+			hash_res[hash_keys[i]] = float(s_line[i])   # want to improve this to tuples
54
+
55
+		return hash_res
56
+
57
+
58
+	def close(self):
59
+		self.fd.close()
60
+
61
+
62
+def main():
63
+	"Main to test the library"
64
+	samples = readsample(sys.argv[1], ["peak", "intensity"])
65
+
66
+	value = samples.next() 
67
+	while value:
68
+		print value
69
+		value = samples.next()
70
+
71
+	samples.close()
72
+
73
+	samples = readsample(sys.argv[2], None, None, 0)
74
+	print samples.readAll()
75
+
76
+if __name__ == '__main__':
77
+	main()

+ 1
- 0
static/Chart.js

@@ -0,0 +1 @@
1
+Subproject commit dd4a67e85ccadb7aac4754977985318cf312f6b7

+ 587
- 0
static/bootstrap/css/bootstrap-theme.css Visa fil

@@ -0,0 +1,587 @@
1
+/*!
2
+ * Bootstrap v3.3.5 (http://getbootstrap.com)
3
+ * Copyright 2011-2015 Twitter, Inc.
4
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
5
+ */
6
+.btn-default,
7
+.btn-primary,
8
+.btn-success,
9
+.btn-info,
10
+.btn-warning,
11
+.btn-danger {
12
+  text-shadow: 0 -1px 0 rgba(0, 0, 0, .2);
13
+  -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 1px rgba(0, 0, 0, .075);
14
+          box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 1px rgba(0, 0, 0, .075);
15
+}
16
+.btn-default:active,
17
+.btn-primary:active,
18
+.btn-success:active,
19
+.btn-info:active,
20
+.btn-warning:active,
21
+.btn-danger:active,
22
+.btn-default.active,
23
+.btn-primary.active,
24
+.btn-success.active,
25
+.btn-info.active,
26
+.btn-warning.active,
27
+.btn-danger.active {
28
+  -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
29
+          box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
30
+}
31
+.btn-default.disabled,
32
+.btn-primary.disabled,
33
+.btn-success.disabled,
34
+.btn-info.disabled,
35
+.btn-warning.disabled,
36
+.btn-danger.disabled,
37
+.btn-default[disabled],
38
+.btn-primary[disabled],
39
+.btn-success[disabled],
40
+.btn-info[disabled],
41
+.btn-warning[disabled],
42
+.btn-danger[disabled],
43
+fieldset[disabled] .btn-default,
44
+fieldset[disabled] .btn-primary,
45
+fieldset[disabled] .btn-success,
46
+fieldset[disabled] .btn-info,
47
+fieldset[disabled] .btn-warning,
48
+fieldset[disabled] .btn-danger {
49
+  -webkit-box-shadow: none;
50
+          box-shadow: none;
51
+}
52
+.btn-default .badge,
53
+.btn-primary .badge,
54
+.btn-success .badge,
55
+.btn-info .badge,
56
+.btn-warning .badge,
57
+.btn-danger .badge {
58
+  text-shadow: none;
59
+}
60
+.btn:active,
61
+.btn.active {
62
+  background-image: none;
63
+}
64
+.btn-default {
65
+  text-shadow: 0 1px 0 #fff;
66
+  background-image: -webkit-linear-gradient(top, #fff 0%, #e0e0e0 100%);
67
+  background-image:      -o-linear-gradient(top, #fff 0%, #e0e0e0 100%);
68
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#fff), to(#e0e0e0));
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+  background-image:         linear-gradient(to bottom, #fff 0%, #e0e0e0 100%);
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+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#ffe0e0e0', GradientType=0);
71
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
72
+  background-repeat: repeat-x;
73
+  border-color: #dbdbdb;
74
+  border-color: #ccc;
75
+}
76
+.btn-default:hover,
77
+.btn-default:focus {
78
+  background-color: #e0e0e0;
79
+  background-position: 0 -15px;
80
+}
81
+.btn-default:active,
82
+.btn-default.active {
83
+  background-color: #e0e0e0;
84
+  border-color: #dbdbdb;
85
+}
86
+.btn-default.disabled,
87
+.btn-default[disabled],
88
+fieldset[disabled] .btn-default,
89
+.btn-default.disabled:hover,
90
+.btn-default[disabled]:hover,
91
+fieldset[disabled] .btn-default:hover,
92
+.btn-default.disabled:focus,
93
+.btn-default[disabled]:focus,
94
+fieldset[disabled] .btn-default:focus,
95
+.btn-default.disabled.focus,
96
+.btn-default[disabled].focus,
97
+fieldset[disabled] .btn-default.focus,
98
+.btn-default.disabled:active,
99
+.btn-default[disabled]:active,
100
+fieldset[disabled] .btn-default:active,
101
+.btn-default.disabled.active,
102
+.btn-default[disabled].active,
103
+fieldset[disabled] .btn-default.active {
104
+  background-color: #e0e0e0;
105
+  background-image: none;
106
+}
107
+.btn-primary {
108
+  background-image: -webkit-linear-gradient(top, #337ab7 0%, #265a88 100%);
109
+  background-image:      -o-linear-gradient(top, #337ab7 0%, #265a88 100%);
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+  background-image: -webkit-gradient(linear, left top, left bottom, from(#337ab7), to(#265a88));
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+  background-image:         linear-gradient(to bottom, #337ab7 0%, #265a88 100%);
112
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff265a88', GradientType=0);
113
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
114
+  background-repeat: repeat-x;
115
+  border-color: #245580;
116
+}
117
+.btn-primary:hover,
118
+.btn-primary:focus {
119
+  background-color: #265a88;
120
+  background-position: 0 -15px;
121
+}
122
+.btn-primary:active,
123
+.btn-primary.active {
124
+  background-color: #265a88;
125
+  border-color: #245580;
126
+}
127
+.btn-primary.disabled,
128
+.btn-primary[disabled],
129
+fieldset[disabled] .btn-primary,
130
+.btn-primary.disabled:hover,
131
+.btn-primary[disabled]:hover,
132
+fieldset[disabled] .btn-primary:hover,
133
+.btn-primary.disabled:focus,
134
+.btn-primary[disabled]:focus,
135
+fieldset[disabled] .btn-primary:focus,
136
+.btn-primary.disabled.focus,
137
+.btn-primary[disabled].focus,
138
+fieldset[disabled] .btn-primary.focus,
139
+.btn-primary.disabled:active,
140
+.btn-primary[disabled]:active,
141
+fieldset[disabled] .btn-primary:active,
142
+.btn-primary.disabled.active,
143
+.btn-primary[disabled].active,
144
+fieldset[disabled] .btn-primary.active {
145
+  background-color: #265a88;
146
+  background-image: none;
147
+}
148
+.btn-success {
149
+  background-image: -webkit-linear-gradient(top, #5cb85c 0%, #419641 100%);
150
+  background-image:      -o-linear-gradient(top, #5cb85c 0%, #419641 100%);
151
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#5cb85c), to(#419641));
152
+  background-image:         linear-gradient(to bottom, #5cb85c 0%, #419641 100%);
153
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5cb85c', endColorstr='#ff419641', GradientType=0);
154
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
155
+  background-repeat: repeat-x;
156
+  border-color: #3e8f3e;
157
+}
158
+.btn-success:hover,
159
+.btn-success:focus {
160
+  background-color: #419641;
161
+  background-position: 0 -15px;
162
+}
163
+.btn-success:active,
164
+.btn-success.active {
165
+  background-color: #419641;
166
+  border-color: #3e8f3e;
167
+}
168
+.btn-success.disabled,
169
+.btn-success[disabled],
170
+fieldset[disabled] .btn-success,
171
+.btn-success.disabled:hover,
172
+.btn-success[disabled]:hover,
173
+fieldset[disabled] .btn-success:hover,
174
+.btn-success.disabled:focus,
175
+.btn-success[disabled]:focus,
176
+fieldset[disabled] .btn-success:focus,
177
+.btn-success.disabled.focus,
178
+.btn-success[disabled].focus,
179
+fieldset[disabled] .btn-success.focus,
180
+.btn-success.disabled:active,
181
+.btn-success[disabled]:active,
182
+fieldset[disabled] .btn-success:active,
183
+.btn-success.disabled.active,
184
+.btn-success[disabled].active,
185
+fieldset[disabled] .btn-success.active {
186
+  background-color: #419641;
187
+  background-image: none;
188
+}
189
+.btn-info {
190
+  background-image: -webkit-linear-gradient(top, #5bc0de 0%, #2aabd2 100%);
191
+  background-image:      -o-linear-gradient(top, #5bc0de 0%, #2aabd2 100%);
192
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#5bc0de), to(#2aabd2));
193
+  background-image:         linear-gradient(to bottom, #5bc0de 0%, #2aabd2 100%);
194
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff2aabd2', GradientType=0);
195
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
196
+  background-repeat: repeat-x;
197
+  border-color: #28a4c9;
198
+}
199
+.btn-info:hover,
200
+.btn-info:focus {
201
+  background-color: #2aabd2;
202
+  background-position: 0 -15px;
203
+}
204
+.btn-info:active,
205
+.btn-info.active {
206
+  background-color: #2aabd2;
207
+  border-color: #28a4c9;
208
+}
209
+.btn-info.disabled,
210
+.btn-info[disabled],
211
+fieldset[disabled] .btn-info,
212
+.btn-info.disabled:hover,
213
+.btn-info[disabled]:hover,
214
+fieldset[disabled] .btn-info:hover,
215
+.btn-info.disabled:focus,
216
+.btn-info[disabled]:focus,
217
+fieldset[disabled] .btn-info:focus,
218
+.btn-info.disabled.focus,
219
+.btn-info[disabled].focus,
220
+fieldset[disabled] .btn-info.focus,
221
+.btn-info.disabled:active,
222
+.btn-info[disabled]:active,
223
+fieldset[disabled] .btn-info:active,
224
+.btn-info.disabled.active,
225
+.btn-info[disabled].active,
226
+fieldset[disabled] .btn-info.active {
227
+  background-color: #2aabd2;
228
+  background-image: none;
229
+}
230
+.btn-warning {
231
+  background-image: -webkit-linear-gradient(top, #f0ad4e 0%, #eb9316 100%);
232
+  background-image:      -o-linear-gradient(top, #f0ad4e 0%, #eb9316 100%);
233
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#f0ad4e), to(#eb9316));
234
+  background-image:         linear-gradient(to bottom, #f0ad4e 0%, #eb9316 100%);
235
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff0ad4e', endColorstr='#ffeb9316', GradientType=0);
236
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
237
+  background-repeat: repeat-x;
238
+  border-color: #e38d13;
239
+}
240
+.btn-warning:hover,
241
+.btn-warning:focus {
242
+  background-color: #eb9316;
243
+  background-position: 0 -15px;
244
+}
245
+.btn-warning:active,
246
+.btn-warning.active {
247
+  background-color: #eb9316;
248
+  border-color: #e38d13;
249
+}
250
+.btn-warning.disabled,
251
+.btn-warning[disabled],
252
+fieldset[disabled] .btn-warning,
253
+.btn-warning.disabled:hover,
254
+.btn-warning[disabled]:hover,
255
+fieldset[disabled] .btn-warning:hover,
256
+.btn-warning.disabled:focus,
257
+.btn-warning[disabled]:focus,
258
+fieldset[disabled] .btn-warning:focus,
259
+.btn-warning.disabled.focus,
260
+.btn-warning[disabled].focus,
261
+fieldset[disabled] .btn-warning.focus,
262
+.btn-warning.disabled:active,
263
+.btn-warning[disabled]:active,
264
+fieldset[disabled] .btn-warning:active,
265
+.btn-warning.disabled.active,
266
+.btn-warning[disabled].active,
267
+fieldset[disabled] .btn-warning.active {
268
+  background-color: #eb9316;
269
+  background-image: none;
270
+}
271
+.btn-danger {
272
+  background-image: -webkit-linear-gradient(top, #d9534f 0%, #c12e2a 100%);
273
+  background-image:      -o-linear-gradient(top, #d9534f 0%, #c12e2a 100%);
274
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#d9534f), to(#c12e2a));
275
+  background-image:         linear-gradient(to bottom, #d9534f 0%, #c12e2a 100%);
276
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9534f', endColorstr='#ffc12e2a', GradientType=0);
277
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
278
+  background-repeat: repeat-x;
279
+  border-color: #b92c28;
280
+}
281
+.btn-danger:hover,
282
+.btn-danger:focus {
283
+  background-color: #c12e2a;
284
+  background-position: 0 -15px;
285
+}
286
+.btn-danger:active,
287
+.btn-danger.active {
288
+  background-color: #c12e2a;
289
+  border-color: #b92c28;
290
+}
291
+.btn-danger.disabled,
292
+.btn-danger[disabled],
293
+fieldset[disabled] .btn-danger,
294
+.btn-danger.disabled:hover,
295
+.btn-danger[disabled]:hover,
296
+fieldset[disabled] .btn-danger:hover,
297
+.btn-danger.disabled:focus,
298
+.btn-danger[disabled]:focus,
299
+fieldset[disabled] .btn-danger:focus,
300
+.btn-danger.disabled.focus,
301
+.btn-danger[disabled].focus,
302
+fieldset[disabled] .btn-danger.focus,
303
+.btn-danger.disabled:active,
304
+.btn-danger[disabled]:active,
305
+fieldset[disabled] .btn-danger:active,
306
+.btn-danger.disabled.active,
307
+.btn-danger[disabled].active,
308
+fieldset[disabled] .btn-danger.active {
309
+  background-color: #c12e2a;
310
+  background-image: none;
311
+}
312
+.thumbnail,
313
+.img-thumbnail {
314
+  -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
315
+          box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
316
+}
317
+.dropdown-menu > li > a:hover,
318
+.dropdown-menu > li > a:focus {
319
+  background-color: #e8e8e8;
320
+  background-image: -webkit-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
321
+  background-image:      -o-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
322
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#f5f5f5), to(#e8e8e8));
323
+  background-image:         linear-gradient(to bottom, #f5f5f5 0%, #e8e8e8 100%);
324
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff5f5f5', endColorstr='#ffe8e8e8', GradientType=0);
325
+  background-repeat: repeat-x;
326
+}
327
+.dropdown-menu > .active > a,
328
+.dropdown-menu > .active > a:hover,
329
+.dropdown-menu > .active > a:focus {
330
+  background-color: #2e6da4;
331
+  background-image: -webkit-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
332
+  background-image:      -o-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
333
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#337ab7), to(#2e6da4));
334
+  background-image:         linear-gradient(to bottom, #337ab7 0%, #2e6da4 100%);
335
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff2e6da4', GradientType=0);
336
+  background-repeat: repeat-x;
337
+}
338
+.navbar-default {
339
+  background-image: -webkit-linear-gradient(top, #fff 0%, #f8f8f8 100%);
340
+  background-image:      -o-linear-gradient(top, #fff 0%, #f8f8f8 100%);
341
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#fff), to(#f8f8f8));
342
+  background-image:         linear-gradient(to bottom, #fff 0%, #f8f8f8 100%);
343
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#fff8f8f8', GradientType=0);
344
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
345
+  background-repeat: repeat-x;
346
+  border-radius: 4px;
347
+  -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 5px rgba(0, 0, 0, .075);
348
+          box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 5px rgba(0, 0, 0, .075);
349
+}
350
+.navbar-default .navbar-nav > .open > a,
351
+.navbar-default .navbar-nav > .active > a {
352
+  background-image: -webkit-linear-gradient(top, #dbdbdb 0%, #e2e2e2 100%);
353
+  background-image:      -o-linear-gradient(top, #dbdbdb 0%, #e2e2e2 100%);
354
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#dbdbdb), to(#e2e2e2));
355
+  background-image:         linear-gradient(to bottom, #dbdbdb 0%, #e2e2e2 100%);
356
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffdbdbdb', endColorstr='#ffe2e2e2', GradientType=0);
357
+  background-repeat: repeat-x;
358
+  -webkit-box-shadow: inset 0 3px 9px rgba(0, 0, 0, .075);
359
+          box-shadow: inset 0 3px 9px rgba(0, 0, 0, .075);
360
+}
361
+.navbar-brand,
362
+.navbar-nav > li > a {
363
+  text-shadow: 0 1px 0 rgba(255, 255, 255, .25);
364
+}
365
+.navbar-inverse {
366
+  background-image: -webkit-linear-gradient(top, #3c3c3c 0%, #222 100%);
367
+  background-image:      -o-linear-gradient(top, #3c3c3c 0%, #222 100%);
368
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#3c3c3c), to(#222));
369
+  background-image:         linear-gradient(to bottom, #3c3c3c 0%, #222 100%);
370
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff3c3c3c', endColorstr='#ff222222', GradientType=0);
371
+  filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
372
+  background-repeat: repeat-x;
373
+  border-radius: 4px;
374
+}
375
+.navbar-inverse .navbar-nav > .open > a,
376
+.navbar-inverse .navbar-nav > .active > a {
377
+  background-image: -webkit-linear-gradient(top, #080808 0%, #0f0f0f 100%);
378
+  background-image:      -o-linear-gradient(top, #080808 0%, #0f0f0f 100%);
379
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#080808), to(#0f0f0f));
380
+  background-image:         linear-gradient(to bottom, #080808 0%, #0f0f0f 100%);
381
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff080808', endColorstr='#ff0f0f0f', GradientType=0);
382
+  background-repeat: repeat-x;
383
+  -webkit-box-shadow: inset 0 3px 9px rgba(0, 0, 0, .25);
384
+          box-shadow: inset 0 3px 9px rgba(0, 0, 0, .25);
385
+}
386
+.navbar-inverse .navbar-brand,
387
+.navbar-inverse .navbar-nav > li > a {
388
+  text-shadow: 0 -1px 0 rgba(0, 0, 0, .25);
389
+}
390
+.navbar-static-top,
391
+.navbar-fixed-top,
392
+.navbar-fixed-bottom {
393
+  border-radius: 0;
394
+}
395
+@media (max-width: 767px) {
396
+  .navbar .navbar-nav .open .dropdown-menu > .active > a,
397
+  .navbar .navbar-nav .open .dropdown-menu > .active > a:hover,
398
+  .navbar .navbar-nav .open .dropdown-menu > .active > a:focus {
399
+    color: #fff;
400
+    background-image: -webkit-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
401
+    background-image:      -o-linear-gradient(top, #337ab7 0%, #2e6da4 100%);
402
+    background-image: -webkit-gradient(linear, left top, left bottom, from(#337ab7), to(#2e6da4));
403
+    background-image:         linear-gradient(to bottom, #337ab7 0%, #2e6da4 100%);
404
+    filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff337ab7', endColorstr='#ff2e6da4', GradientType=0);
405
+    background-repeat: repeat-x;
406
+  }
407
+}
408
+.alert {
409
+  text-shadow: 0 1px 0 rgba(255, 255, 255, .2);
410
+  -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .25), 0 1px 2px rgba(0, 0, 0, .05);
411
+          box-shadow: inset 0 1px 0 rgba(255, 255, 255, .25), 0 1px 2px rgba(0, 0, 0, .05);
412
+}
413
+.alert-success {
414
+  background-image: -webkit-linear-gradient(top, #dff0d8 0%, #c8e5bc 100%);
415
+  background-image:      -o-linear-gradient(top, #dff0d8 0%, #c8e5bc 100%);
416
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#dff0d8), to(#c8e5bc));
417
+  background-image:         linear-gradient(to bottom, #dff0d8 0%, #c8e5bc 100%);
418
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffdff0d8', endColorstr='#ffc8e5bc', GradientType=0);
419
+  background-repeat: repeat-x;
420
+  border-color: #b2dba1;
421
+}
422
+.alert-info {
423
+  background-image: -webkit-linear-gradient(top, #d9edf7 0%, #b9def0 100%);
424
+  background-image:      -o-linear-gradient(top, #d9edf7 0%, #b9def0 100%);
425
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#d9edf7), to(#b9def0));
426
+  background-image:         linear-gradient(to bottom, #d9edf7 0%, #b9def0 100%);
427
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9edf7', endColorstr='#ffb9def0', GradientType=0);
428
+  background-repeat: repeat-x;
429
+  border-color: #9acfea;
430
+}
431
+.alert-warning {
432
+  background-image: -webkit-linear-gradient(top, #fcf8e3 0%, #f8efc0 100%);
433
+  background-image:      -o-linear-gradient(top, #fcf8e3 0%, #f8efc0 100%);
434
+  background-image: -webkit-gradient(linear, left top, left bottom, from(#fcf8e3), to(#f8efc0));
435
+  background-image:         linear-gradient(to bottom, #fcf8e3 0%, #f8efc0 100%);
436
+  filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffcf8e3', endColorstr='#fff8efc0', GradientType=0);
437
+  background-repeat: repeat-x;
438
+  border-color: #f5e79e;
439
+}
440
+.alert-danger {
441
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+ 288
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static/bootstrap/fonts/glyphicons-halflings-regular.ttf Visa fil


Binär
static/bootstrap/fonts/glyphicons-halflings-regular.woff Visa fil


Binär
static/bootstrap/fonts/glyphicons-halflings-regular.woff2 Visa fil


+ 2363
- 0
static/bootstrap/js/bootstrap.js
Filskillnaden har hållits tillbaka eftersom den är för stor
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+ 7
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static/bootstrap/js/bootstrap.min.js
Filskillnaden har hållits tillbaka eftersom den är för stor
Visa fil


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static/bootstrap/js/npm.js Visa fil

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+require('../../js/transition.js')
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+require('../../js/alert.js')
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+require('../../js/button.js')
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+require('../../js/tab.js')
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+require('../../js/affix.js')

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static/dropzone.css Visa fil

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+    -ms-transform: translateY(-40px);
25
+    -o-transform: translateY(-40px);
26
+    transform: translateY(-40px); } }
27
+@-moz-keyframes passing-through {
28
+  0% {
29
+    opacity: 0;
30
+    -webkit-transform: translateY(40px);
31
+    -moz-transform: translateY(40px);
32
+    -ms-transform: translateY(40px);
33
+    -o-transform: translateY(40px);
34
+    transform: translateY(40px); }
35
+  30%, 70% {
36
+    opacity: 1;
37
+    -webkit-transform: translateY(0px);
38
+    -moz-transform: translateY(0px);
39
+    -ms-transform: translateY(0px);
40
+    -o-transform: translateY(0px);
41
+    transform: translateY(0px); }
42
+  100% {
43
+    opacity: 0;
44
+    -webkit-transform: translateY(-40px);
45
+    -moz-transform: translateY(-40px);
46
+    -ms-transform: translateY(-40px);
47
+    -o-transform: translateY(-40px);
48
+    transform: translateY(-40px); } }
49
+@keyframes passing-through {
50
+  0% {
51
+    opacity: 0;
52
+    -webkit-transform: translateY(40px);
53
+    -moz-transform: translateY(40px);
54
+    -ms-transform: translateY(40px);
55
+    -o-transform: translateY(40px);
56
+    transform: translateY(40px); }
57
+  30%, 70% {
58
+    opacity: 1;
59
+    -webkit-transform: translateY(0px);
60
+    -moz-transform: translateY(0px);
61
+    -ms-transform: translateY(0px);
62
+    -o-transform: translateY(0px);
63
+    transform: translateY(0px); }
64
+  100% {
65
+    opacity: 0;
66
+    -webkit-transform: translateY(-40px);
67
+    -moz-transform: translateY(-40px);
68
+    -ms-transform: translateY(-40px);
69
+    -o-transform: translateY(-40px);
70
+    transform: translateY(-40px); } }
71
+@-webkit-keyframes slide-in {
72
+  0% {
73
+    opacity: 0;
74
+    -webkit-transform: translateY(40px);
75
+    -moz-transform: translateY(40px);
76
+    -ms-transform: translateY(40px);
77
+    -o-transform: translateY(40px);
78
+    transform: translateY(40px); }
79
+  30% {
80
+    opacity: 1;
81
+    -webkit-transform: translateY(0px);
82
+    -moz-transform: translateY(0px);
83
+    -ms-transform: translateY(0px);
84
+    -o-transform: translateY(0px);
85
+    transform: translateY(0px); } }
86
+@-moz-keyframes slide-in {
87
+  0% {
88
+    opacity: 0;
89
+    -webkit-transform: translateY(40px);
90
+    -moz-transform: translateY(40px);
91
+    -ms-transform: translateY(40px);
92
+    -o-transform: translateY(40px);
93
+    transform: translateY(40px); }
94
+  30% {
95
+    opacity: 1;
96
+    -webkit-transform: translateY(0px);
97
+    -moz-transform: translateY(0px);
98
+    -ms-transform: translateY(0px);
99
+    -o-transform: translateY(0px);
100
+    transform: translateY(0px); } }
101
+@keyframes slide-in {
102
+  0% {
103
+    opacity: 0;
104
+    -webkit-transform: translateY(40px);
105
+    -moz-transform: translateY(40px);
106
+    -ms-transform: translateY(40px);
107
+    -o-transform: translateY(40px);
108
+    transform: translateY(40px); }
109
+  30% {
110
+    opacity: 1;
111
+    -webkit-transform: translateY(0px);
112
+    -moz-transform: translateY(0px);
113
+    -ms-transform: translateY(0px);
114
+    -o-transform: translateY(0px);
115
+    transform: translateY(0px); } }
116
+@-webkit-keyframes pulse {
117
+  0% {
118
+    -webkit-transform: scale(1);
119
+    -moz-transform: scale(1);
120
+    -ms-transform: scale(1);
121
+    -o-transform: scale(1);
122
+    transform: scale(1); }
123
+  10% {
124
+    -webkit-transform: scale(1.1);
125
+    -moz-transform: scale(1.1);
126
+    -ms-transform: scale(1.1);
127
+    -o-transform: scale(1.1);
128
+    transform: scale(1.1); }
129
+  20% {
130
+    -webkit-transform: scale(1);
131
+    -moz-transform: scale(1);
132
+    -ms-transform: scale(1);
133
+    -o-transform: scale(1);
134
+    transform: scale(1); } }
135
+@-moz-keyframes pulse {
136
+  0% {
137
+    -webkit-transform: scale(1);
138
+    -moz-transform: scale(1);
139
+    -ms-transform: scale(1);
140
+    -o-transform: scale(1);
141
+    transform: scale(1); }
142
+  10% {
143
+    -webkit-transform: scale(1.1);
144
+    -moz-transform: scale(1.1);
145
+    -ms-transform: scale(1.1);
146
+    -o-transform: scale(1.1);
147
+    transform: scale(1.1); }
148
+  20% {
149
+    -webkit-transform: scale(1);
150
+    -moz-transform: scale(1);
151
+    -ms-transform: scale(1);
152
+    -o-transform: scale(1);
153
+    transform: scale(1); } }
154
+@keyframes pulse {
155
+  0% {
156
+    -webkit-transform: scale(1);
157
+    -moz-transform: scale(1);
158
+    -ms-transform: scale(1);
159
+    -o-transform: scale(1);
160
+    transform: scale(1); }
161
+  10% {
162
+    -webkit-transform: scale(1.1);
163
+    -moz-transform: scale(1.1);
164
+    -ms-transform: scale(1.1);
165
+    -o-transform: scale(1.1);
166
+    transform: scale(1.1); }
167
+  20% {
168
+    -webkit-transform: scale(1);
169
+    -moz-transform: scale(1);
170
+    -ms-transform: scale(1);
171
+    -o-transform: scale(1);
172
+    transform: scale(1); } }
173
+.dropzone, .dropzone * {
174
+  box-sizing: border-box; }
175
+
176
+.dropzone {
177
+  min-height: 150px;
178
+  border: 2px solid rgba(0, 0, 0, 0.3);
179
+  background: white;
180
+  padding: 20px 20px; }
181
+  .dropzone.dz-clickable {
182
+    cursor: pointer; }
183
+    .dropzone.dz-clickable * {
184
+      cursor: default; }
185
+    .dropzone.dz-clickable .dz-message, .dropzone.dz-clickable .dz-message * {
186
+      cursor: pointer; }
187
+  .dropzone.dz-started .dz-message {
188
+    display: none; }
189
+  .dropzone.dz-drag-hover {
190
+    border-style: solid; }
191
+    .dropzone.dz-drag-hover .dz-message {
192
+      opacity: 0.5; }
193
+  .dropzone .dz-message {
194
+    text-align: center;
195
+    margin: 2em 0; }
196
+  .dropzone .dz-preview {
197
+    position: relative;
198
+    display: inline-block;
199
+    vertical-align: top;
200
+    margin: 16px;
201
+    min-height: 100px; }
202
+    .dropzone .dz-preview:hover {
203
+      z-index: 1000; }
204
+      .dropzone .dz-preview:hover .dz-details {
205
+        opacity: 1; }
206
+    .dropzone .dz-preview.dz-file-preview .dz-image {
207
+      border-radius: 20px;
208
+      background: #999;
209
+      background: linear-gradient(to bottom, #eee, #ddd); }
210
+    .dropzone .dz-preview.dz-file-preview .dz-details {
211
+      opacity: 1; }
212
+    .dropzone .dz-preview.dz-image-preview {
213
+      background: white; }
214
+      .dropzone .dz-preview.dz-image-preview .dz-details {
215
+        -webkit-transition: opacity 0.2s linear;
216
+        -moz-transition: opacity 0.2s linear;
217
+        -ms-transition: opacity 0.2s linear;
218
+        -o-transition: opacity 0.2s linear;
219
+        transition: opacity 0.2s linear; }
220
+    .dropzone .dz-preview .dz-remove {
221
+      font-size: 14px;
222
+      text-align: center;
223
+      display: block;
224
+      cursor: pointer;
225
+      border: none; }
226
+      .dropzone .dz-preview .dz-remove:hover {
227
+        text-decoration: underline; }
228
+    .dropzone .dz-preview:hover .dz-details {
229
+      opacity: 1; }
230
+    .dropzone .dz-preview .dz-details {
231
+      z-index: 20;
232
+      position: absolute;
233
+      top: 0;
234
+      left: 0;
235
+      opacity: 0;
236
+      font-size: 13px;
237
+      min-width: 100%;
238
+      max-width: 100%;
239
+      padding: 2em 1em;
240
+      text-align: center;
241
+      color: rgba(0, 0, 0, 0.9);
242
+      line-height: 150%; }
243
+      .dropzone .dz-preview .dz-details .dz-size {
244
+        margin-bottom: 1em;
245
+        font-size: 16px; }
246
+      .dropzone .dz-preview .dz-details .dz-filename {
247
+        white-space: nowrap; }
248
+        .dropzone .dz-preview .dz-details .dz-filename:hover span {
249
+          border: 1px solid rgba(200, 200, 200, 0.8);
250
+          background-color: rgba(255, 255, 255, 0.8); }
251
+        .dropzone .dz-preview .dz-details .dz-filename:not(:hover) {
252
+          overflow: hidden;
253
+          text-overflow: ellipsis; }
254
+          .dropzone .dz-preview .dz-details .dz-filename:not(:hover) span {
255
+            border: 1px solid transparent; }
256
+      .dropzone .dz-preview .dz-details .dz-filename span, .dropzone .dz-preview .dz-details .dz-size span {
257
+        background-color: rgba(255, 255, 255, 0.4);
258
+        padding: 0 0.4em;
259
+        border-radius: 3px; }
260
+    .dropzone .dz-preview:hover .dz-image img {
261
+      -webkit-transform: scale(1.05, 1.05);
262
+      -moz-transform: scale(1.05, 1.05);
263
+      -ms-transform: scale(1.05, 1.05);
264
+      -o-transform: scale(1.05, 1.05);
265
+      transform: scale(1.05, 1.05);
266
+      -webkit-filter: blur(8px);
267
+      filter: blur(8px); }
268
+    .dropzone .dz-preview .dz-image {
269
+      border-radius: 20px;
270
+      overflow: hidden;
271
+      width: 120px;
272
+      height: 120px;
273
+      position: relative;
274
+      display: block;
275
+      z-index: 10; }
276
+      .dropzone .dz-preview .dz-image img {
277
+        display: block; }
278
+    .dropzone .dz-preview.dz-success .dz-success-mark {
279
+      -webkit-animation: passing-through 3s cubic-bezier(0.77, 0, 0.175, 1);
280
+      -moz-animation: passing-through 3s cubic-bezier(0.77, 0, 0.175, 1);
281
+      -ms-animation: passing-through 3s cubic-bezier(0.77, 0, 0.175, 1);
282
+      -o-animation: passing-through 3s cubic-bezier(0.77, 0, 0.175, 1);
283
+      animation: passing-through 3s cubic-bezier(0.77, 0, 0.175, 1); }
284
+    .dropzone .dz-preview.dz-error .dz-error-mark {
285
+      opacity: 1;
286
+      -webkit-animation: slide-in 3s cubic-bezier(0.77, 0, 0.175, 1);
287
+      -moz-animation: slide-in 3s cubic-bezier(0.77, 0, 0.175, 1);
288
+      -ms-animation: slide-in 3s cubic-bezier(0.77, 0, 0.175, 1);
289
+      -o-animation: slide-in 3s cubic-bezier(0.77, 0, 0.175, 1);
290
+      animation: slide-in 3s cubic-bezier(0.77, 0, 0.175, 1); }
291
+    .dropzone .dz-preview .dz-success-mark, .dropzone .dz-preview .dz-error-mark {
292
+      pointer-events: none;
293
+      opacity: 0;
294
+      z-index: 500;
295
+      position: absolute;
296
+      display: block;
297
+      top: 50%;
298
+      left: 50%;
299
+      margin-left: -27px;
300
+      margin-top: -27px; }
301
+      .dropzone .dz-preview .dz-success-mark svg, .dropzone .dz-preview .dz-error-mark svg {
302
+        display: block;
303
+        width: 54px;
304
+        height: 54px; }
305
+    .dropzone .dz-preview.dz-processing .dz-progress {
306
+      opacity: 1;
307
+      -webkit-transition: all 0.2s linear;
308
+      -moz-transition: all 0.2s linear;
309
+      -ms-transition: all 0.2s linear;
310
+      -o-transition: all 0.2s linear;
311
+      transition: all 0.2s linear; }
312
+    .dropzone .dz-preview.dz-complete .dz-progress {
313
+      opacity: 0;
314
+      -webkit-transition: opacity 0.4s ease-in;
315
+      -moz-transition: opacity 0.4s ease-in;
316
+      -ms-transition: opacity 0.4s ease-in;
317
+      -o-transition: opacity 0.4s ease-in;
318
+      transition: opacity 0.4s ease-in; }
319
+    .dropzone .dz-preview:not(.dz-processing) .dz-progress {
320
+      -webkit-animation: pulse 6s ease infinite;
321
+      -moz-animation: pulse 6s ease infinite;
322
+      -ms-animation: pulse 6s ease infinite;
323
+      -o-animation: pulse 6s ease infinite;
324
+      animation: pulse 6s ease infinite; }
325
+    .dropzone .dz-preview .dz-progress {
326
+      opacity: 1;
327
+      z-index: 1000;
328
+      pointer-events: none;
329
+      position: absolute;
330
+      height: 16px;
331
+      left: 50%;
332
+      top: 50%;
333
+      margin-top: -8px;
334
+      width: 80px;
335
+      margin-left: -40px;
336
+      background: rgba(255, 255, 255, 0.9);
337
+      -webkit-transform: scale(1);
338
+      border-radius: 8px;
339
+      overflow: hidden; }
340
+      .dropzone .dz-preview .dz-progress .dz-upload {
341
+        background: #333;
342
+        background: linear-gradient(to bottom, #666, #444);
343
+        position: absolute;
344
+        top: 0;
345
+        left: 0;
346
+        bottom: 0;
347
+        width: 0;
348
+        -webkit-transition: width 300ms ease-in-out;
349
+        -moz-transition: width 300ms ease-in-out;
350
+        -ms-transition: width 300ms ease-in-out;
351
+        -o-transition: width 300ms ease-in-out;
352
+        transition: width 300ms ease-in-out; }
353
+    .dropzone .dz-preview.dz-error .dz-error-message {
354
+      display: block; }
355
+    .dropzone .dz-preview.dz-error:hover .dz-error-message {
356
+      opacity: 1;
357
+      pointer-events: auto; }
358
+    .dropzone .dz-preview .dz-error-message {
359
+      pointer-events: none;
360
+      z-index: 1000;
361
+      position: absolute;
362
+      display: block;
363
+      display: none;
364
+      opacity: 0;
365
+      -webkit-transition: opacity 0.3s ease;
366
+      -moz-transition: opacity 0.3s ease;
367
+      -ms-transition: opacity 0.3s ease;
368
+      -o-transition: opacity 0.3s ease;
369
+      transition: opacity 0.3s ease;
370
+      border-radius: 8px;
371
+      font-size: 13px;
372
+      top: 130px;
373
+      left: -10px;
374
+      width: 140px;
375
+      background: #be2626;
376
+      background: linear-gradient(to bottom, #be2626, #a92222);
377
+      padding: 0.5em 1.2em;
378
+      color: white; }
379
+      .dropzone .dz-preview .dz-error-message:after {
380
+        content: '';
381
+        position: absolute;
382
+        top: -6px;
383
+        left: 64px;
384
+        width: 0;
385
+        height: 0;
386
+        border-left: 6px solid transparent;
387
+        border-right: 6px solid transparent;
388
+        border-bottom: 6px solid #be2626; }

+ 1752
- 0
static/dropzone.js
Filskillnaden har hållits tillbaka eftersom den är för stor
Visa fil


+ 40
- 0
static/signin.css Visa fil

@@ -0,0 +1,40 @@
1
+body {
2
+  padding-top: 40px;
3
+  padding-bottom: 40px;
4
+  background-color: #eee;
5
+}
6
+
7
+.form-signin {
8
+  max-width: 330px;
9
+  padding: 15px;
10
+  margin: 0 auto;
11
+}
12
+.form-signin .form-signin-heading,
13
+.form-signin .checkbox {
14
+  margin-bottom: 10px;
15
+}
16
+.form-signin .checkbox {
17
+  font-weight: normal;
18
+}
19
+.form-signin .form-control {
20
+  position: relative;
21
+  height: auto;
22
+  -webkit-box-sizing: border-box;
23
+     -moz-box-sizing: border-box;
24
+          box-sizing: border-box;
25
+  padding: 10px;
26
+  font-size: 16px;
27
+}
28
+.form-signin .form-control:focus {
29
+  z-index: 2;
30
+}
31
+.form-signin input[type="email"] {
32
+  margin-bottom: -1px;
33
+  border-bottom-right-radius: 0;
34
+  border-bottom-left-radius: 0;
35
+}
36
+.form-signin input[type="password"] {
37
+  margin-bottom: 10px;
38
+  border-top-left-radius: 0;
39
+  border-top-right-radius: 0;
40
+}

+ 27
- 0
templates/bootstrapheader.html Visa fil

@@ -0,0 +1,27 @@
1
+<!doctype html>
2
+<html>
3
+<head>
4
+	<link rel="stylesheet" href="{{url_for('static', filename='bootstrap/css/bootstrap.min.css')}}">
5
+		<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script>
6
+	<script src="{{url_for('static', filename='bootstrap/js/bootstrap.min.js')}}"></script>
7
+
8
+	{% if request.path =="/experiment" %}
9
+	<script src="{{url_for('static', filename='dropzone.js')}}"></script>
10
+	<link rel=stylesheet type=text/css href="{{url_for('static', filename='dropzone.css')}}">
11
+	<script src="{{url_for('static', filename='Chart.js/Chart.js')}}"></script>
12
+	{% endif %}
13
+
14
+</head>
15
+
16
+<div class="container">
17
+<ul class="nav nav-pills">
18
+	<li {% if request.path =="/" %} class="active" {% endif %}><a href="/">Home</a></li>	
19
+	<li {% if request.path =="/profile" %} class="active" {% endif %}><a href="/profile">Profile</a></li>	
20
+	{% if request.path == "/editExperiment" %}<li><a href="/experiment">Back to Experiment</a></li> {% endif %}
21
+	<li><a href="/logout">Logout</a></li>
22
+</ul>
23
+</div>
24
+
25
+{% block body%} {% endblock %}
26
+
27
+</html>

+ 127
- 0
templates/editexperiment.html Visa fil

@@ -0,0 +1,127 @@
1
+{% extends "bootstrapheader.html" %}
2
+
3
+{% block body %}
4
+<body>
5
+<div class="container">
6
+
7
+{% for m in msg %}
8
+  <div class="alert alert-{{m["type"]}}">
9
+    <a href="#" class="close" data-dismiss="alert" aria-label="close">&times;</a>
10
+    {{m["msg"]}}
11
+  </div>
12
+{% endfor %}
13
+
14
+<h3>Edit Experiment</h3>
15
+<form class="form-horizontal" role="form" action="/editExperiment" method="post">
16
+  <div class="form-group">
17
+    <label class="control-label col-sm-2" for="name">Name:</label>
18
+    <div class="col-sm-10">
19
+      <input type="text" name="name" class="form-control" id="name" placeholder="Enter Experiment Name" {% if name %} value="{{name}}"  {% endif %} required>
20
+    </div>
21
+  </div>
22
+
23
+  <div class="form-group">
24
+    <label class="control-label col-sm-2" for="name">Description:</label>
25
+    <div class="col-sm-10">
26
+      <textarea class="form-control" rows="5" id="description" name="description" placeholder="Experiment Description" required>{% if description %}{{description}} {% endif %} </textarea>
27
+    </div>
28
+  </div>
29
+  <div class="form-group">
30
+    <div class="col-sm-offset-2 col-sm-10">
31
+      <button type="submit" name="save" class="btn btn-primary">Save</button>
32
+    </div>
33
+  </div>
34
+</form>
35
+</div>
36
+
37
+<hr>
38
+
39
+
40
+<div class="container">
41
+<h3>Peaks</h3>
42
+{% if exp_peaks %}
43
+<form class="form-horizontal" role="form" action="/editExperiment" method="post">
44
+  <div class="form-group">
45
+      <label class="control-label col-sm-2" for="name">Peaks:</label>
46
+      <div class="col-sm-10">
47
+      <table class="table table-striped">
48
+      {% for p in exp_peaks %}
49
+        <tr><td>{{p['peak']}}</td><td  class="text-right">
50
+        {% if not samples %}
51
+        <button type="submit" class="btn btn-danger btn-xs" name="remove_peak" value="{{p['ep_id']}}">
52
+          <span class="glyphicon glyphicon-remove"></span> Remove 
53
+        </button>
54
+        {% else %}
55
+        Can't delete peak after first sample.
56
+        {% endif %}
57
+        </td</tr>
58
+      {% endfor %}
59
+      </table>
60
+    </div>
61
+  </div>
62
+</form>
63
+{% endif %}
64
+
65
+{% if not samples %}
66
+<form class="form-horizontal" role="form" action="/editExperiment" method="post">
67
+  <div class="form-group">
68
+    <label class="control-label col-sm-2" for="inpeaks">Peaks: </label>
69
+    <div class="col-sm-10">
70
+    <input type="text" class="form-control" id="inpeaks" name="inpeaks" placeholder="Add Peaks" value = "1257.4,1419.5,1581.5,1743.6,1809.7,1905.6" required>
71
+    </div>
72
+  </div>
73
+  <div class="form-group">
74
+    <div class="col-sm-offset-2 col-sm-10">
75
+    <button type="submit" class="btn btn-primary">Add Peaks</button>
76
+    </div>
77
+  </div>
78
+
79
+</form>
80
+</div>
81
+
82
+<hr>
83
+{% endif %}
84
+<div class="container">
85
+<h3>Collaborators:</h3>
86
+
87
+{% if collaborators %}
88
+<form class="form-horizontal" role="form" action="/editExperiment" method="post">
89
+  <div class="form-group">
90
+      <label class="control-label col-sm-2" for="collaborator">Collaborators:</label>
91
+      <div class="col-sm-10">
92
+      <table class="table table-striped">
93
+      {% for c in collaborators %}
94
+        <tr><td>{{c["name"]}}</td><td>{{c["last"]}}</td><td>{{c["email"]}}</td><td  class="text-right">
95
+        <button type="submit" class="btn btn-danger btn-xs" name="remove_col" value="{{c["ueid"]}}">
96
+          <span class="glyphicon glyphicon-remove"></span> Remove 
97
+        </button>
98
+        </td</tr>
99
+      {% endfor %}
100
+      </table>
101
+    </div>
102
+  </div>
103
+</form>
104
+{% endif %}
105
+
106
+<form class="form-horizontal" role="form" action="/editExperiment" method="post">
107
+  <div class="form-group">
108
+    <label class="control-label col-sm-2" for="collaborators">Collaborator Email: </label>
109
+    <div class="col-sm-10">
110
+    <input type="text" class="form-control" id="collaborators" name="collaborators" placeholder="Collaborator email" required>
111
+    </div>
112
+  </div>
113
+  <div class="form-group">
114
+    <div class="col-sm-offset-2 col-sm-10">
115
+    <button type="submit" class="btn btn-primary">Add Collaborator</button>
116
+    </div>
117
+  </div>
118
+
119
+</form>
120
+
121
+</div>
122
+
123
+</body>
124
+
125
+{% endblock %}
126
+
127
+

+ 325
- 0
templates/experiment.html Visa fil

@@ -0,0 +1,325 @@
1
+{% extends "bootstrapheader.html" %}
2
+
3
+{% block body %}
4
+<body>
5
+<div class="container">
6
+<h2>Experiment</h2>
7
+Loged in as {{email}}
8
+
9
+
10
+<div class=container>
11
+
12
+	<div class="panel panel-primary">
13
+	<div class="panel-heading">
14
+		<h3>{{experiment['name']}}</h3>
15
+	</div>
16
+	<div class="panel-body">
17
+	<p>Description: {{experiment['description']}}<p>
18
+
19
+	{% if exp_peaks %}
20
+	<table class="table table-striped">
21
+	<tr><th>Peaks</th>
22
+	{% for p in exp_peaks %}
23
+		<tr><td>{{p['peak']}}</td></tr>
24
+	{% endfor %}
25
+	</table>
26
+	{% endif %}
27
+
28
+	Experiment date: {{experiment['date']}}
29
+
30
+	<form role="form" action="/editExperiment" method="post">
31
+		<button type="submit" class="btn btn-primary" name="editInfo" value="edit">Edit</button>
32
+	</form>
33
+
34
+	</div>
35
+	</div>
36
+
37
+{% for m in msg %}
38
+	<div class="alert alert-{{m["type"]}}">
39
+	<a href="#" class="close" data-dismiss="alert" aria-label="close">&times;</a>
40
+	{{m["msg"]}}
41
+</div>
42
+{% endfor %}
43
+
44
+	<!-- 
45
+
46
+	THE AVERAGES OF THE SAMPLES RELATIVE INTENSITIES
47
+
48
+	-->
49
+
50
+	{% if averages %}
51
+	<h4>Peaks Average: </h4>
52
+	<canvas id="averages" width="600" height="400"></canvas>
53
+	<script type="text/javascript">
54
+	var ctxA = document.getElementById("averages");
55
+	var data = {
56
+		labels: [
57
+		{% for peak, average in averages|dictsort %}
58
+        {{peak}},
59
+        {% endfor %}
60
+		],
61
+	    datasets: [
62
+        {
63
+            label: "My First dataset",
64
+            fillColor: "rgba(220,220,220,0.5)",
65
+            strokeColor: "rgba(220,220,220,0.8)",
66
+            highlightFill: "rgba(220,220,220,0.75)",
67
+            highlightStroke: "rgba(220,220,220,1)",
68
+            data: [
69
+            {% for peak, average in averages|dictsort %}
70
+            {{average}},
71
+            {% endfor %}
72
+            ]
73
+        }]} ;
74
+ 		var chartA = new Chart(ctxA.getContext("2d")).Line(data, {bezierCurve: false}); 		
75
+
76
+ 	</script>
77
+
78
+	<table class="table table-striped">
79
+	<tr><th>Peak</th><th>Intensity</th></tr>
80
+	{% for peak, average in averages|dictsort %}	
81
+		<tr><td>{{peak}}</td><td>{{average}}</td>
82
+	{% endfor %}
83
+	</table>
84
+
85
+	{% endif %}
86
+
87
+	<!-- 
88
+
89
+	THE STDDEVS OF THE SAMPLES RELATIVE INTENSITIES
90
+
91
+	-->
92
+	{% if stdDevs %}
93
+	<h4>Peaks Standard Dev: </h4>
94
+
95
+	<canvas id="stdDev" width="600" height="400"></canvas>
96
+	<script type="text/javascript">
97
+
98
+	var ctxSD = document.getElementById("stdDev");
99
+	var data = {
100
+		labels: [
101
+		{% for peak, stddev in stdDevs|dictsort %}
102
+        {{peak}},
103
+        {% endfor %}
104
+		],
105
+	    datasets: [
106
+        {
107
+            label: "My First dataset",
108
+            fillColor: "rgba(220,220,220,0.5)",
109
+            strokeColor: "rgba(220,220,220,0.8)",
110
+            highlightFill: "rgba(220,220,220,0.75)",
111
+            highlightStroke: "rgba(220,220,220,1)",
112
+            data: [
113
+            {% for peak, stddev in stdDevs|dictsort %}
114
+            {{stddev}},
115
+            {% endfor %}
116
+            ]
117
+        }]} ;
118
+ 		var chartSD = new Chart(ctxSD.getContext("2d")).Line(data, {bezierCurve: false}); 	
119
+
120
+ 	</script>
121
+
122
+	<table class="table table-striped">
123
+	<tr><th>Peak</th><th>Intensity</th></tr>
124
+	{% for peak, stddev in stdDevs|dictsort %}	
125
+		<tr><td>{{peak}}</td><td>{{stddev}}</td>
126
+	{% endfor %}
127
+	</table>
128
+
129
+	{% endif %}	
130
+
131
+	<!-- 
132
+
133
+	THE SEMS OF THE SAMPLES RELATIVE INTENSITIES
134
+
135
+	-->
136
+	
137
+	{% if sems %}
138
+	<h4>Peaks SEM: </h4>
139
+	<canvas id="sems" width="600" height="400"></canvas>
140
+	<script type="text/javascript">
141
+
142
+	var ctxSEM = document.getElementById("sems");
143
+	var data = {
144
+		labels: [
145
+		{% for peak, sem in sems|dictsort %}
146
+        {{peak}},
147
+        {% endfor %}
148
+		],
149
+	    datasets: [
150
+        {
151
+            label: "My First dataset",
152
+            fillColor: "rgba(220,220,220,0.5)",
153
+            strokeColor: "rgba(220,220,220,0.8)",
154
+            highlightFill: "rgba(220,220,220,0.75)",
155
+            highlightStroke: "rgba(220,220,220,1)",
156
+            data: [
157
+            {% for peak, sem in sems|dictsort %}
158
+            {{sem}},
159
+            {% endfor %}
160
+            ]
161
+        }]} ;
162
+ 		var chartSEM = new Chart(ctxSEM.getContext("2d")).Line(data, {bezierCurve: false}); 	
163
+ 	</script>
164
+
165
+	<table class="table table-striped">
166
+	<tr><th>Peak</th><th>Intensity</th></tr>
167
+	{% for peak, sem in sems|dictsort %}	
168
+		<tr><td>{{peak}}</td><td>{{sem}}</td>
169
+	{% endfor %}
170
+	</table>
171
+	{% endif %}
172
+
173
+	<h3>Samples:</h3>
174
+	<div class="panel-group" id="accordion">
175
+
176
+			{% if samples %}
177
+			{% for sample in samples %}
178
+			<div class="panel panel-default" id="panelOut{{sample['sid']}}">
179
+				<div class="panel-heading">
180
+					<h4 class="panel-title">
181
+						<a data-toggle="collapse" data-parent="#accordion" href="#collapse{{sample['sid']}}">{{sample['name']}}</a>
182
+					</h4>
183
+				</div>
184
+				<div id="collapse{{sample['sid']}}" class="panel-collapse collapse">
185
+					<div class="panel-body">
186
+
187
+						<h4>Experiment Relative Intensity</h4>
188
+						{% if sample['rel_ints'] %}
189
+
190
+						<canvas id="graphS{{sample['sid']}}" width="600" height="400"></canvas>
191
+						<script type="text/javascript">
192
+
193
+					 	$(document).ready(function(){
194
+					 	$('#panelOut{{sample['sid']}}').on('shown.bs.collapse', function () {
195
+						var ctxOut{{sample['sid']}} = document.getElementById("graphS{{sample['sid']}}");
196
+						var data = {
197
+							labels: [
198
+							{% for peak, relint in sample['rel_ints']|dictsort %}
199
+                            {{peak}},
200
+                            {% endfor %}
201
+							],
202
+						    datasets: [
203
+					        {
204
+					            label: "My First dataset",
205
+					            fillColor: "rgba(220,220,220,0.5)",
206
+					            strokeColor: "rgba(220,220,220,0.8)",
207
+					            highlightFill: "rgba(220,220,220,0.75)",
208
+					            highlightStroke: "rgba(220,220,220,1)",
209
+					            data: [
210
+                                {% for peak, relint in sample['rel_ints']|dictsort %}
211
+                                {{relint}},
212
+                                {% endfor %}
213
+					            ]
214
+					        }]} ;
215
+					 		var chartOut{{sample['sid']}} = new Chart(ctxOut{{sample['sid']}}.getContext("2d")).Line(data, {bezierCurve: false}); 	
216
+							chartOut{{sample['sid']}}.destroy();
217
+							chartOut{{sample['sid']}} = new Chart(ctxOut{{sample['sid']}}.getContext("2d")).Line(data, {bezierCurve: false});
218
+   							
219
+                         });
220
+					 	}) ;
221
+					 	</script>
222
+
223
+						<table class="table table-striped">
224
+						<tr><th>Peak</th><th>Intensity</th></tr>
225
+						{% for peak, relint in sample['rel_ints']|dictsort %}	
226
+							<tr><td>{{peak}}</td><td>{{relint}}</td>
227
+						{% endfor %}
228
+						</table>
229
+						{% endif %}
230
+
231
+						<h4>Peaks:</h4>
232
+						<div class="panel-group" id="accordion2">
233
+						{% if sample['peaks'] %}
234
+						{% for peak in sample['peaks'] %}
235
+						<div class="panel panel-default" id="panelIn{{peak['pid']}}">
236
+							<div class="panel-heading">
237
+								<h4 class="panel-title">
238
+									<a data-toggle="collapse" data-parent="#accordion2" href="#collapsep{{peak['pid']}}">{{peak['peak']}}</a>
239
+								</h4>
240
+							</div>
241
+							<div id="collapsep{{peak['pid']}}" class="panel-collapse collapse">
242
+								<div class="panel-body">
243
+								{% if peak['intensities'] %}
244
+								<canvas id="graph{{peak['pid']}}" width="600" height="400"></canvas>
245
+								<script type="text/javascript">
246
+
247
+							 	$(document).ready(function(){
248
+							 	$('#panelIn{{peak['pid']}}').on('shown.bs.collapse', function () {
249
+								var ctxIn{{peak['pid']}} = document.getElementById("graph{{peak['pid']}}");
250
+								var data = {
251
+									labels: [
252
+									{% for pi in peak['intensities'] %}
253
+                                    {{pi['peak']}},
254
+                                    {% endfor %}
255
+									],
256
+								    datasets: [
257
+							        {
258
+							            label: "My First dataset",
259
+							            fillColor: "rgba(220,220,220,0.5)",
260
+							            strokeColor: "rgba(220,220,220,0.8)",
261
+							            highlightFill: "rgba(220,220,220,0.75)",
262
+							            highlightStroke: "rgba(220,220,220,1)",
263
+							            data: [
264
+                                        {% for pi in peak['intensities'] %}
265
+                                        {{pi['intensity']}},
266
+                                        {% endfor %}
267
+							            ]
268
+							        }]} ;
269
+							 		var chartIn{{peak['pid']}} = new Chart(ctxIn{{peak['pid']}}.getContext("2d")).Line(data, {bezierCurve: false}); 	
270
+        							chartIn{{peak['pid']}}.destroy();
271
+        							chartIn{{peak['pid']}} = new Chart(ctxIn{{peak['pid']}}.getContext("2d")).Line(data, {bezierCurve: false});
272
+ 	   							
273
+                                 });
274
+							 	}) ;
275
+
276
+
277
+							 	</script>
278
+								<table class="table table-striped">
279
+									<tr><th>Peak</th><th>Intensity</th></tr>
280
+								{% for pi in peak['intensities'] %}	
281
+										<tr><td>{{pi['peak']}}</td><td>{{pi['intensity']}}</td>
282
+								{% endfor %}
283
+								</table>
284
+								{% endif %}
285
+								</div>
286
+							</div>
287
+						</div>
288
+						{% endfor %}
289
+						{% endif %}
290
+						</div>
291
+					</div>
292
+				</div>
293
+			</div>
294
+			{% endfor %}
295
+			{% endif %}
296
+
297
+	</div>
298
+
299
+<form action="/upload"
300
+	class="dropzone"
301
+	id="maldidropzone"
302
+>
303
+	<input type="hidden" name="eid" value="{{eid}}">
304
+</form>
305
+
306
+<script type="text/javascript">
307
+Dropzone.options.maldidropzone = {
308
+  init: function() {
309
+        thisDropzone = this;
310
+        this.on("success", function(file, responseText) {
311
+            console.log(responseText); 
312
+            setTimeout(function(){location = location ;}, 2000);
313
+        });
314
+    }
315
+};
316
+
317
+</script>
318
+
319
+</div> <!-- /container -->
320
+
321
+</body>
322
+
323
+{% endblock %}
324
+
325
+

+ 146
- 0
templates/index.html Visa fil

@@ -0,0 +1,146 @@
1
+{% extends "bootstrapheader.html" %}
2
+
3
+{% block body %}
4
+<body>
5
+<div class="container">
6
+<h2>Home</h2>
7
+Loged in as {{email}}
8
+
9
+
10
+<div class=container>
11
+
12
+{% for m in msg %}
13
+	<div class="alert alert-{{m["type"]}}">
14
+	<a href="#" class="close" data-dismiss="alert" aria-label="close">&times;</a>
15
+	{{m["msg"]}}
16
+</div>
17
+{% endfor %}
18
+
19
+	<h3>My Experiments:</h3>
20
+	<div class="panel-group" id="accordion">
21
+
22
+			{% if experiments %}
23
+			{% for dict_item in experiments %}
24
+			<div class="panel panel-default">
25
+				<div class="panel-heading">
26
+					<h4 class="panel-title">
27
+						<a data-toggle="collapse" data-parent="#accordion" href="#collapse{{dict_item['eid']}}">{{dict_item['name']}}</a>
28
+					</h4>
29
+				</div>
30
+				<div id="collapse{{dict_item['eid']}}" class="panel-collapse collapse">
31
+					<div class="panel-body">
32
+						<div class="container">
33
+						<h4>Description:</h4>
34
+						<p>
35
+							{{dict_item['description']}}
36
+						</p>
37
+						<p>
38
+							Experiment date: {{dict_item['date']}}
39
+						</p>
40
+						<form class="form-inline" name="options" role="form" action="#" method="post">
41
+							<input type="hidden" name="deid" value="{{dict_item['eid']}}">
42
+							<button type="submit" class="btn btn-primary" name="eid" value="{{dict_item['eid']}}" OnClick="SetDestView(this)">View</button>
43
+							<button type="submit" class="btn btn-danger" name="deid" value="{{dict_item['eid']}}">Delete</button>
44
+						</form>
45
+						</div>
46
+					</div>
47
+				</div>
48
+			</div>
49
+			{% endfor %}
50
+			{% endif %}
51
+
52
+	</div>
53
+
54
+	<form class="form-inline" role="form" action="/experiment" method="post">
55
+		<div class="form-group">
56
+		<label for="expname">Name: </label>
57
+		<input type="text" class="form-control" id="expname" name="expname" placeholder="New experiment name" required>
58
+		</div>
59
+		<div class="form-group">
60
+		<label for="inpeaks">Peaks: </label>
61
+		<input type="text" class="form-control" id="inpeaks" name="inpeaks" placeholder="Experiment Peaks" value = "1257.4,1419.5,1581.5,1743.6,1809.7,1905.6" required>
62
+		</div>
63
+		<button type="submit" class="btn btn-primary">New Experiment</button>
64
+	</form>
65
+
66
+</div> <!-- /container -->
67
+
68
+<div id="confirm" class="modal fade" tabindex="-1" role="dialog" aria-labelledby="myModalLabel" aria-hidden="true">
69
+	<div class="modal-dialog">
70
+		<div class="modal-content">
71
+            <div class="modal-header">
72
+            	Confirm Submit
73
+            </div>
74
+  			<div class="modal-body">
75
+    		Are you sure you want to delete the experiment?
76
+  			</div>
77
+  			<div class="modal-footer">
78
+    			<button type="button" data-dismiss="modal" class="btn btn-primary" id="delete">Delete</button>
79
+   				 <button type="button" data-dismiss="modal" class="btn">Cancel</button>
80
+  			</div>
81
+  		</div>
82
+  	</div>
83
+</div>
84
+
85
+<div class=container>
86
+
87
+{% if col_experiments %}
88
+	<h3>Collaborations:</h3>
89
+	<div class="panel-group" id="accordion">
90
+
91
+			{% for dict_item in col_experiments %}
92
+			<div class="panel panel-default">
93
+				<div class="panel-heading">
94
+					<h4 class="panel-title">
95
+						<a data-toggle="collapse" data-parent="#accordion" href="#collapse{{dict_item['eid']}}">{{dict_item['name']}}</a>
96
+					</h4>
97
+				</div>
98
+				<div id="collapse{{dict_item['eid']}}" class="panel-collapse collapse">
99
+					<div class="panel-body">
100
+						<div class="container">
101
+						<h4>Description:</h4>
102
+						<p>
103
+							{{dict_item['description']}}
104
+						</p>
105
+						<p>
106
+							Experiment date: {{dict_item['date']}}
107
+						</p>
108
+						<form class="form-inline" name="options" role="form" action="" method="post">
109
+							<button type="submit" class="btn btn-primary" name="eid" value="{{dict_item['eid']}}" OnClick="SetDestView(this)">View</button>
110
+						</form>
111
+						</div>
112
+					</div>
113
+				</div>
114
+			</div>
115
+			{% endfor %}
116
+{% endif %}
117
+
118
+	</div>
119
+</div> <!-- /container -->
120
+
121
+<SCRIPT LANGUAGE="JavaScript">
122
+        function SetDestView(element) {
123
+            element.form.action = "/experiment";
124
+        }
125
+
126
+        function SetDestDelete(element) {
127
+            element.form.action = "/";
128
+        }
129
+
130
+	$('button[name="deid"]').on('click', function(e){
131
+	    e.preventDefault();
132
+	    var $form=$(this).closest('form');
133
+	    $('#confirm').modal({ backdrop: 'static', keyboard: false })
134
+	        .one('click', '#delete', function (e) {
135
+	           $form.action = "/"
136
+	           $form.submit();
137
+	        });
138
+	});
139
+
140
+</script> 
141
+
142
+</body>
143
+
144
+{% endblock %}
145
+
146
+

+ 33
- 0
templates/login.html Visa fil

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+{% extends "signinheader.html" %}
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+
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+{% block body %}
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+<body>
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+<div class="container">
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+      <form class="form-signin" action="/login" method="post">
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+        <h2 class="form-signin-heading">Please sign in</h2>
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+        <label for="email" class="sr-only">Email address</label>
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+        <input type="email" name="email" id="email" class="form-control" placeholder="Email address" required autofocus>
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+        <label for="passwd" class="sr-only">Password</label>
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+        <input type="password" id="passwd" name="passwd" class="form-control" placeholder="Password" required>
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+        <div class="checkbox">
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+          <label>
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+            <input type="checkbox" value="remember-me"> Remember me
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+          </label>
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+        </div>
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+        <button class="btn btn-lg btn-primary btn-block" type="submit">Sign in</button>
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+      </form>
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+
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+  {% for m in msg %}
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+  <div class="alert alert-{{m["type"]}}">
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+    <a href="#" class="close" data-dismiss="alert" aria-label="close">&times;</a>
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+    {{m["msg"]}}
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+  </div>
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+  {% endfor %}
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+  
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+<div class="container">
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+</div> <!-- /container -->
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+</body>
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+
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+{% endblock %}
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+
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+

+ 81
- 0
templates/profile.html Visa fil

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+{% extends "bootstrapheader.html" %}
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+
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+{% block body %}
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+<body>
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+<div class="container">
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+<h2>Profile</h2>
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+<form class="form-horizontal" role="form" action="/profile" method="post">
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+  <div class="form-group">
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+    <label class="control-label col-sm-2" for="email">Email:</label>
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+    <div class="col-sm-10">
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+      <input type="email" name="email" class="form-control" id="email" placeholder="Enter email" value={{email}} required>
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+    </div>
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+  </div>
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+
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+  <div class="form-group">
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+    <label class="control-label col-sm-2" for="name">Name:</label>
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+    <div class="col-sm-10">
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+      <input type="text" name="name" class="form-control" id="name" placeholder="Enter Name" value={{name}} required>
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+    </div>
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+  </div>
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+
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+  <div class="form-group">
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+    <label class="control-label col-sm-2" for="last">Last:</label>
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+    <div class="col-sm-10">
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+      <input type="text" name="last" class="form-control" id="last" placeholder="Enter Last" value={{last}} required>
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+    </div>
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+  </div>
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+  <div class="form-group">
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+    <div class="col-sm-offset-2 col-sm-10">
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+      <button type="submit" class="btn btn-primary">Submit</button>
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+    </div>
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+  </div>
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+</form>
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+</div>
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+
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+{% for m in msg %}
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+  <div class="alert alert-{{m["type"]}}">
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+    <a href="#" class="close" data-dismiss="alert" aria-label="close">&times;</a>
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+    {{m["msg"]}}
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+  </div>
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+{% endfor %}
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+
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+<hr>
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+
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+<div class=container>
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+<h2>Change Password</h2>
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+<form class="form-horizontal" role="form" action="/profile" method="post">
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+  <div class="form-group">
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+    <label class="control-label col-sm-2" for="pwd">Password:</label>
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+    <div class="col-sm-10">
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+      <input type="password" name="pwd" class="form-control" id="pwd" placeholder="Enter password" required>
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+    </div>
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+  </div>
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+
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+  <div class="form-group">
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+    <label class="control-label col-sm-2" for="pwd2">Password:</label>
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+    <div class="col-sm-10">
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+      <input type="password" name="pwd2" class="form-control" id="pwd2" placeholder="Confirm password" required>
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+    </div>
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+  </div>
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+
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+  <div class="form-group">
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+    <div class="col-sm-offset-2 col-sm-10">
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+      <button type="submit" class="btn btn-primary">Submit</button>
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+    </div>
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+  </div>
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+</form>
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+</div>
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+
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+ {% for m in pmsg %}
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+  <div class="alert alert-{{m["type"]}}">
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+    <a href="#" class="close" data-dismiss="alert" aria-label="close">&times;</a>
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+    {{m["msg"]}}
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+  </div>
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+  {% endfor %}
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+
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+</body>
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+
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+{% endblock %}
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+
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+

+ 12
- 0
templates/signinheader.html Visa fil

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+<!doctype html>
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+<html>
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+<head>
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+	<link rel="stylesheet" href="{{url_for('static', filename='bootstrap/css/bootstrap.min.css')}}">
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+	<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script>
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+	<link rel="stylesheet" href="{{url_for('static', filename='signin.css')}}">
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+	<script src="{{url_for('static', filename='bootstrap/js/bootstrap.min.js')}}"></script>
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+</head>
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+
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+{% block body%} {% endblock %}
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+
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+</html>

+ 20
- 0
templates/upload.html Visa fil

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+{% extends "bootstrapheader.html" %}
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+
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+{% block body %}
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+
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+<div class=container>
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+<h2>Experiment:</h2>
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+
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+<form action="/upload"
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+	class="dropzone"
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+	id="maldidropzone"
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+>
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+
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+</form>
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+
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+</div>
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+
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+</title>
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+
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+
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+{% endblock %}